Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01552 ATGGAGTTTGCATCTTCTTCTTTATCATCATCATCTTCATCCTTCTTAACATCAGAACCCCATTTCATACACGATGTGTTCATCAACTTTGGTGGAGAAGAAATCGGTCGAAGGTTTGTTTCTCATCTCCACTCTGTCCTTTTACAAGCTCAAGTCAAAACTTTTATTAGCCAGGAGAATCTGCATGACGGAATGAAGCTGGAAGAGCACATGCGAGCAATAGGACACACTAAGATTACGATAATCGTTTTCTCCAAATCATACACTGAATCTGCTTGCTGTCTTCTTGAGCTTGAAAAAATCATTGAATGCCACGAAACATTTGGCCAAATAGTTCTGCCCGTCTTTTACGAGATTGACCCATTGGATGTACGTCATCAGAAGGATGATTTTGGAAAAGCGTTGGAAGACACTGCATACAGAACCTATTCGGGAGAACAACTGCAACATGCGCGGTCCAGGTGGAGCAGTGCACTCAATAGAGTTGCAGGTATGACTGGTTGGGATGACAGAGATTTCAGGTATGATGCTGAACTTGTAGAGCGAATTGTTAGCCGCGTTAATACATTACTGGATTATAAAGACTTGTTTATTACCGAATATCCTGTTGGATTAGAGTCCCGCGTGGAAGACGTGATTAAATGTATTGAAAATCAATCCACCAAAGTGTGTATGATAGGAATATGGGGAATGGGAGGATCAGGTAAAACAACCATAGCCAAAGCCATCTACAATCGAATTTATCGTGAATTCATTGGTAAGAGTTTTATTGAGAATATTCGTTATGAAGGGTATGTTGCTTTGCAAGAAAATCTTCTTTCTGATGTCCTAAAATCCAACTTGAAGGTGAAAACCGATGGGAGGGGAAGAACTATGATCGAGAATGGATTTTCTCGAAAAAAGTTGCTCATTGTGCTTGATGACGTGAATCACATTGGCCAATTTGAAAACCTATGCGGGAGTCTTGAATGGTTCGGTCAAGGAACTGTGATAATCATTACAACTAGAGATATTAGCCTGCTGAACCAATTCAGTGATAATTATGTTTATAAAATGGATCTTTTAAACGAAAATGAGTCACTTGAGCTTTTTAGTTGGCATGCCTTTAGAGAAGCAAAACCAAGAAAAGAAAGGAGTGAACTCGCAAGAAACGTCGTTGTTTATTGTGAAGGACTACCTCTAGCTCTTCAGTTCCTTGGTTCCTGTTTATGTGATAGGAGAATAGAAGTGTGGGAAAGTGTATTGTTGAAACTACAAAGAATTCCCCCGAATGAACAACTTCTGAACGTATTAAAAATAAGTTTTGATAATTTACGTGATACGGAAAAGGATATATTTCTGGATGTATGTTGTTTCTTTATTGGCAAAGAAAAAGACTATGTGACAGAGATATTAAATGGCTGTGGACTACATGCTGATATTGGAATAACAGTTCTCATAGAGCGTGGTCTCATAAAAGTTGAAAGGAACAACAAACTTCAAATGTGTTCTTTGTTACAAGATATGGGAAGAGAAATTACTTGTCAAGAATGCCCAGAGAAACCGGGCAAAAGGAGTCGATTGTGGATGCAGGGTGACGTAAAATATGTACTGAAAGAGAATACTGGGACAGAAGCTATATTGTCCCTGAAACTTGATTCCAGCATTAGAGATTGCTTTGAAGCTCATGCTTTCAAGGAAATGCAGAGACTAAGACTGCTACAACTTGATCATGTACAACTTAGTGGAGATTGTGAGCACATTTCTAAACAACTGAGATGGATTTGTTGGCGAGGGTTTCCATATAAATGCATTCCAAAGAACTTTCATTTGGAAAATGTAATTGCAATGGATTTAAAGCATAAGTCATCTTCAACTCGTCTGGAAACAACCACTCTGGAAACAATCCCAGATTTTAGAGCGGTTAAAATTCCTTAA 1917 0.386 MEFASSSLSSSSSSFLTSEPHFIHDVFINFGGEEIGRRFVSHLHSVLLQAQVKTFISQENLHDGMKLEEHMRAIGHTKITIIVFSKSYTESACCLLELEKIIECHETFGQIVLPVFYEIDPLDVRHQKDDFGKALEDTAYRTYSGEQLQHARSRWSSALNRVAGMTGWDDRDFRYDAELVERIVSRVNTLLDYKDLFITEYPVGLESRVEDVIKCIENQSTKVCMIGIWGMGGSGKTTIAKAIYNRIYREFIGKSFIENIRYEGYVALQENLLSDVLKSNLKVKTDGRGRTMIENGFSRKKLLIVLDDVNHIGQFENLCGSLEWFGQGTVIIITTRDISLLNQFSDNYVYKMDLLNENESLELFSWHAFREAKPRKERSELARNVVVYCEGLPLALQFLGSCLCDRRIEVWESVLLKLQRIPPNEQLLNVLKISFDNLRDTEKDIFLDVCCFFIGKEKDYVTEILNGCGLHADIGITVLIERGLIKVERNNKLQMCSLLQDMGREITCQECPEKPGKRSRLWMQGDVKYVLKENTGTEAILSLKLDSSIRDCFEAHAFKEMQRLRLLQLDHVQLSGDCEHISKQLRWICWRGFPYKCIPKNFHLENVIAMDLKHKSSSTRLETTTLETIPDFRAVKIP 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01552 638 Gene3D - 354 439 IPR042197 -
Vian9g01552 638 Gene3D - 195 350 IPR027417 -
Vian9g01552 638 Pfam TIR domain 24 187 IPR000157 GO:0007165
Vian9g01552 638 ProSiteProfiles TIR domain profile. 22 191 IPR000157 GO:0007165
Vian9g01552 638 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 618 IPR044974 GO:0006952
Vian9g01552 638 PRINTS Disease resistance protein signature 602 618 - -
Vian9g01552 638 PRINTS Disease resistance protein signature 389 403 - -
Vian9g01552 638 PRINTS Disease resistance protein signature 225 240 - -
Vian9g01552 638 PRINTS Disease resistance protein signature 296 310 - -
Vian9g01552 638 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 168 IPR035897 -
Vian9g01552 638 SUPERFAMILY "Winged helix" DNA-binding domain 426 532 IPR036390 -
Vian9g01552 638 Gene3D - 17 193 IPR035897 -
Vian9g01552 638 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 193 - -
Vian9g01552 638 SMART till_3 23 165 IPR000157 GO:0007165
Vian9g01552 638 Pfam NB-ARC domain 206 421 IPR002182 GO:0043531
Vian9g01552 638 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 448 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01552 Vian-Chr9 31837357 31839660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01552 24 612 WRKY Transcription Factor Family AT4G12020 29.016 4.46e-67 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01552 - - vun:114165946 885.174