Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01531 ATGTTGGACTACGAATGGGGAAACCCGTCTTCAATAATGCTAACAGGAAACGAGGAGACCGCAGCCGGAGCTTCCGACCAGACCCACCGTCAAATCTTCGACCACTACGCCTCGCACTCGCTCATCCCCGACCACTTTCTGCACGCGCCAACTCACTCCGCCGTCACCACTGCCGCGGCACCCACCGTCGACTTCACCAACCACCACCACCACTTCAACCCGCAGCCGCACCACCACCACATCAACAACCACCACCACCACCCGTTCTTCGACCCACGCGCCTTCCACGGCGCGTCCTCCGCCTCCTACCCCCCACCCCCTTCCATGCTCTCCCTTGACCCGCTTCCCCACGTCAACGCCACCAACTGCGGCCCCGGGCCCGGACCCGGCCCGGGCGGACTCCTCCTCGTTCCCAAGTCCGAGGACGTCGGTCGGCCCATGGACTTTGTCGGCTCACGAATTGGCCTAAATCTCGGTGGGCGGACGTATTTCTCCTCCTCCGAGGACGATTTCGTGAGCCGTCTGTACCGTCGGTCTCGGCCGGCGGAATCCGGTTCGGCGGCTTCCTCCAACTCCCCGCGCTGCCAGGCCGAGGGATGCAATGCTGATCTGTCTCAGGCGAAGCACTACCACCGACGCCACAAGGTGTGCGAGTTCCACTCGAAAGCCGCCACCGTCATCGCAGCCGGGTTGACTCAGCGATTCTGCCAGCAATGCAGCAGGGGTGGGGGTGGAAAAGACGAAAGTGCCCTTGGGAGAGTGTTGATAATGATTGAGTTTGCCGTACGTGGGGAAATCCCGAGGGCATTTGCGTCCCTAACATGTTTCTTGTTTGCTCTTACTCTACTTTCAGTTTTGCAACCTACTTACATGCATGATTCCTTGAAAATTATTCATGGGGAGAATGAGAATGAGAATGAGGGTTTTCTGTTGCTGTTGTATTTTTGTTTTGAAGGATCTCCACCTGACTCCGGAGCCCAGTCGTCGTCGGTGACGGTGGCGGTGTCCCCGCCGGACTATTTCCGGCAGAGGCCGACCTGTTTGGTTTCTGAGGAAATTGTGGCAGCTGAGCACGGGTGTTCAGGAACATTTATTGGAATCCCTAGCCGTCAAGCTGTCTCCTCTATGGAAGCTACATAG 1140 0.5816 MLDYEWGNPSSIMLTGNEETAAGASDQTHRQIFDHYASHSLIPDHFLHAPTHSAVTTAAAPTVDFTNHHHHFNPQPHHHHINNHHHHPFFDPRAFHGASSASYPPPPSMLSLDPLPHVNATNCGPGPGPGPGGLLLVPKSEDVGRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPAESGSAASSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRGGGGKDESALGRVLIMIEFAVRGEIPRAFASLTCFLFALTLLSVLQPTYMHDSLKIIHGENENENEGFLLLLYFCFEGSPPDSGAQSSSVTVAVSPPDYFRQRPTCLVSEEIVAAEHGCSGTFIGIPSRQAVSSMEAT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01531 379 Gene3D - 185 280 IPR036893 GO:0003677|GO:0005634
Vian9g01531 379 Pfam SBP domain 195 241 IPR004333 GO:0003677
Vian9g01531 379 ProSiteProfiles Zinc finger SBP-type profile. 192 269 IPR004333 GO:0003677
Vian9g01531 379 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 113 241 IPR044817 GO:0003677
Vian9g01531 379 SUPERFAMILY SBT domain 193 241 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01531 Vian-Chr9 31490944 31493558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01531 1 241 SBP-box Gene Family AT1G02065 43.985 4.22e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vian9g01531 SBP 4e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g01531 9 31490944 31493558 Vian9g01531 9 31490944 31493558 ECH