Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01521 ATGAGAAAACGTATCAATATGGAAAACGATGCTGACTTCTTCAATTCCTTTGCCTCAACTTCCACTTCTACCACTTCTACCACCACCACCACCACCACCACAACCCCTTCAATCTTCATTGACACAACAAACACTTCTATTTCTAGCACATCATCGTCATCGTCATCTTCAACCTCAAACTCCTCAAACTCAGATTCATTCACCAAACAACACTCCAAAACCCCTACCACTTCTCAAACCTTGTTGGAAAATGAAAAGGAATCAAAAGGGTGCTGCAAGAAGAGGAAGTTGGAGAATCCTTCCTATAGGGGTGTGAGGATGAGGAACTGGGGCAAATGGGTGTCTGAAATCCGTGAGCCAAGGAAAAAATCAAGAATTTGGCTCGGAACATACCCTACTGCAGAAATGGCTGCTAGAGCACATGATGTAGCTGCTTTAGCCATCAAGGGTCATTCTGCATACCTCAATTTCCCCGAATTGGCTCAAGAACTTCCGACACCAGCTTCTACTTCACCTAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAAACACACCCTTTGATGTTAATCATTGCCAAAGTACTATTGAAGATGAAGAAAGAGAAGAAGAACCACGCCAAACACAAAATGTCTCATCTTCAAGCTCAAACTCCACCAATGATGATGACACTTTGTTTGATCTACCAGATCTTTTCCCTGATGAACTTTGCTCCTATTCTTCTTCTTGGCATTTGTGTGCAGTTGGTAGTGGATTTAGGCTTGAAGAGTCACTTTTTTGGGAGAATTATTAG 792 0.4268 MRKRINMENDADFFNSFASTSTSTTSTTTTTTTTTPSIFIDTTNTSISSTSSSSSSSTSNSSNSDSFTKQHSKTPTTSQTLLENEKESKGCCKKRKLENPSYRGVRMRNWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQELPTPASTSPKDIQAAAAKAANTPFDVNHCQSTIEDEEREEEPRQTQNVSSSSSNSTNDDDTLFDLPDLFPDELCSYSSSWHLCAVGSGFRLEESLFWENY 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01521 263 Gene3D AP2/ERF domain 101 159 IPR036955 GO:0003700|GO:0006355
Vian9g01521 263 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Vian9g01521 263 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Vian9g01521 263 Pfam AP2 domain 100 151 IPR001471 GO:0003700|GO:0006355
Vian9g01521 263 ProSiteProfiles AP2/ERF domain profile. 101 158 IPR001471 GO:0003700|GO:0006355
Vian9g01521 263 MobiDBLite consensus disorder prediction 195 225 - -
Vian9g01521 263 CDD AP2 100 160 IPR001471 GO:0003700|GO:0006355
Vian9g01521 263 MobiDBLite consensus disorder prediction 208 224 - -
Vian9g01521 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 59 235 - -
Vian9g01521 263 SMART rav1_2 101 164 IPR001471 GO:0003700|GO:0006355
Vian9g01521 263 MobiDBLite consensus disorder prediction 12 85 - -
Vian9g01521 263 FunFam Ethylene-responsive transcription factor 2 100 159 - -
Vian9g01521 263 MobiDBLite consensus disorder prediction 1 92 - -
Vian9g01521 263 SUPERFAMILY DNA-binding domain 101 159 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01521 Vian-Chr9 31346257 31347048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01521 93 259 AP2-EREBP Transcription Factor Family AT2G44940 53.398 7.74e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian9g01521 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01521 - - var:108346814 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g01521 9 31346257 31347048 Vian9g01521 9 31346257 31347048 ECH