Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01515 ATGCATGCGAGAAAAATGCACGGGAAAAAGGAGCAAGAAGAGTATATAAGGAAAGGGCCATGGAAAGCAGAAGAAGATGAGGTGCTACTGAACCATGTGAAGAAGTATGGTCCCAGAGATTGGAGCTCCATTCGATCCAAGGGTCTTCTTCAAAGAACTGGCAAGTCTTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAGAATGGTTGCAAGTTTTCACTCGAGGAAGAGAGGATTGTGATAGAGTTGCAGGCACAATTTGGGAACAGGTGGGCTAAGATTGCATCCTTTTTGTCAGGGAGAACAGACAATGATGTGAAAAATTTCTGGAGCAGTAGGCAAAAGAGGTTGGCCAGGATTCTACAGACATCGGGAACAACTTCCAAATCACAGAAAAATAAAACAAAAGTTCCTACCCTTCTTGATGTTCCAACTTTGGAGATTTCCACAAACAAGACAACTGAAATTGTGATAGACCAAATCAAATTTCAAGAACTGGTTTGTCCTGTTGACGGTTTGCTAATTGTTGCTATTTACAGATCGTACTCAAAGGCTCCAAAATTCAGTTCTTCATCAGAGGGAGAATCATCATCAAAGCCTCAGTCATACTCACTACCTTTGATTGAGAATTCTGAGGTTATCAAAATGGTATCTTTACCAGATCTCATAAAGTCTGAGTTACCTAGTTCTGACCCAATCCATGTTGAACAAGGTTTTACCCCTTTTGAGAGCTATAACAGTAGTGAGCAGATTCAACAGATTTCCTTTCCTCAGATTCCAGAACTCCAACATGATCTCACATTCCCAATGGGAAGCCAAGATGTCTTAGCCAGAATCGATGAGCCATATTTCGTTGAAGACTTTTGTGCTCTTGATGATGCATCTGAGTTTGGAATAGGTCTGCAGCACCCCATTGGATTCCCTTTCTTCGAGCCACCAGGAAGTTGCAGAATTGAGACAAGGGATACCATTGATAAGTTCAAAAGCAGTGACAGCTTCTTCGATGACTTCCCTATGGACATGTTTGATCACATGGACCCACCTGCAAGCCCTTCTTTCTTATGA 1074 0.4218 MHARKMHGKKEQEEYIRKGPWKAEEDEVLLNHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSLEEERIVIELQAQFGNRWAKIASFLSGRTDNDVKNFWSSRQKRLARILQTSGTTSKSQKNKTKVPTLLDVPTLEISTNKTTEIVIDQIKFQELVCPVDGLLIVAIYRSYSKAPKFSSSSEGESSSKPQSYSLPLIENSEVIKMVSLPDLIKSELPSSDPIHVEQGFTPFESYNSSEQIQQISFPQIPELQHDLTFPMGSQDVLARIDEPYFVEDFCALDDASEFGIGLQHPIGFPFFEPPGSCRIETRDTIDKFKSSDSFFDDFPMDMFDHMDPPASPSFL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01515 357 Gene3D - 73 142 - -
Vian9g01515 357 CDD SANT 74 113 IPR001005 -
Vian9g01515 357 CDD SANT 20 65 IPR001005 -
Vian9g01515 357 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Vian9g01515 357 PANTHER TRANSCRIPTION FACTOR DUO1 186 355 - -
Vian9g01515 357 ProSiteProfiles Myb-like domain profile. 74 117 IPR001005 -
Vian9g01515 357 FunFam Transcription factor GAMYB 73 142 - -
Vian9g01515 357 FunFam MYB transcription factor 18 70 - -
Vian9g01515 357 Pfam Myb-like DNA-binding domain 21 71 - -
Vian9g01515 357 Pfam Myb-like DNA-binding domain 74 113 IPR001005 -
Vian9g01515 357 SMART sant 17 67 IPR001005 -
Vian9g01515 357 SMART sant 71 119 IPR001005 -
Vian9g01515 357 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Vian9g01515 357 Gene3D - 18 70 - -
Vian9g01515 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 121 IPR017930 -
Vian9g01515 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 69 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01515 Vian-Chr9 31227615 31229707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01515 4 354 MYB Transcription Factor Family AT3G60460 43.490 1.11e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian9g01515 Myb_DNA-bind_6 6.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01515 K09422 - gmx:100805384 478.404