Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01507 ATGTCTCTCCACCGCCATATTTGCAGAACCTCAAAGCTATCAAAGATCCCTTGGAAGTACAAGCAGTTCGCCATAGCACAGGGGCAGAAGTCTGTTACTGATTATCTCCACGCCACGCGCTGCATTCCTTACGCCTTCGCTGATCAAATATCCAAGAACTCCAACAATGCCCTCATGAATCTCATCACCAAGCTCAGTGCTTTCTCCCCTCCCCACTATCCCCACAACCTCAACAAGTTCCTCAGGTACAACCCCATCAACGAATTCGAGTTCTTCTTTGAGAGCATTGGCATACACCCTTCAAAGTTCCCCTCTTTGTTTCCCCAGAACAAGTTCTTCTTTTCAGAAGATGAGACCCTTTTGGATACTGCTTGTGTTCTCAGCGAATATGGGTTTCCCTGGGACAAGCTTGGGGTGCTGTATGAGGAGAGTGGGTGGGTGTTCAACTGGGGTGCTTCTGAATTGAAGGATAGGCTTTGTGGGTTCAAAGGGTATGGTTTTTGCAATGTGCAGGTTGTGGGGATATGCTTGGCTTTCCCATTTGTGTTTGATGGCCAGAAGGGTGCTGAGATTGACGCTTTGTTTTGTGATCTGAGGTTGCTGTTTGGGAAGTTTGGTTTGGCTGAGTGTGTTGAAGAGAAGGGGAATGGTGTGGATGATTGGGTTGGGTTGTGTAGGAAGATAAGGTTGTTTTATGATTTGAATGGAGGGAAGAACATAGGGGAGTTAATTGGAGGTAACAATGGCGTTGGTGTAGGTGGTGTTGTTGAGCATGGGGAAGAGGAGTTGGTTCAAGCAATTGAGTATTTTTGTAGGTTTGGTGCGAAGAAAGAGGACGTGGCACGATTGATTTTGAATGGACCGGAATTGTTGGAGATTGTTTTGAAGACGGGGAAGGTCAATGTGTTGAAGCTGTTGAAACACTTTGGAATGAGTTCCAATGATGTTAATATTGTTAAGAGGGACTATGCTCATGTGTTGGGGACAGTCAAGCTGTGTAACCTGCCAAATGTGATGAGAGCTTTGGGTTTACATGAGTGGTTCTTTGAGAAGATGAAGGATGGGAATCATAGTTTGTTGGTTAGTTTTGTCGCGAACAATCGCAAAGTGGACCGAGTTAAAGGTTATCCAAGTTTTTTGAAGGCTATTGAGGTGTCTAAAACTCCAATTCACAATATGAGTAAGTTGAACTTCTTGCATGGCATTGGCTTTGGAGAAAATGCTTTGACCATGTATATTTTCTCTTACATGCACGGAACAAGTGATGAGTTACAAAAGAGATTTGATTGCCTTCTACATCTTGGAATTGAGTTTTCAAAGCTCTGTAAAATGATCACGGTTCATCCCAAGATTCTTAGCCAAAACCCTGAAAGTTTGGAGCAAAAGATCAATTTCTTGTGTCAGGAAATGGGACAGTCACTTGAGATTTTGGTGACTTTTCCATCATTCTTGTGCTTTGACTTAGAGAATCGCATTAAGCCCAGGTATAAGTTCCATTTGTGGCTTATGGAAAAGGGTCTGTCTTCCAAAAGATATTCTATTGCAAGCATGGTTGCAACAAGTAACAGGAATTTAGTTTCCCGTGCTTTTAAAATCCACCCTGCTGCTCCGAAACATTGGTTTGAGCAATTTTATCCCAGAAATTTGCCAATATGA 1656 0.4312 MSLHRHICRTSKLSKIPWKYKQFAIAQGQKSVTDYLHATRCIPYAFADQISKNSNNALMNLITKLSAFSPPHYPHNLNKFLRYNPINEFEFFFESIGIHPSKFPSLFPQNKFFFSEDETLLDTACVLSEYGFPWDKLGVLYEESGWVFNWGASELKDRLCGFKGYGFCNVQVVGICLAFPFVFDGQKGAEIDALFCDLRLLFGKFGLAECVEEKGNGVDDWVGLCRKIRLFYDLNGGKNIGELIGGNNGVGVGGVVEHGEEELVQAIEYFCRFGAKKEDVARLILNGPELLEIVLKTGKVNVLKLLKHFGMSSNDVNIVKRDYAHVLGTVKLCNLPNVMRALGLHEWFFEKMKDGNHSLLVSFVANNRKVDRVKGYPSFLKAIEVSKTPIHNMSKLNFLHGIGFGENALTMYIFSYMHGTSDELQKRFDCLLHLGIEFSKLCKMITVHPKILSQNPESLEQKINFLCQEMGQSLEILVTFPSFLCFDLENRIKPRYKFHLWLMEKGLSSKRYSIASMVATSNRNLVSRAFKIHPAAPKHWFEQFYPRNLPI 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01507 551 SMART mt_12 474 508 IPR003690 GO:0003690|GO:0006355
Vian9g01507 551 SMART mt_12 442 473 IPR003690 GO:0003690|GO:0006355
Vian9g01507 551 FunFam Transcription termination factor MTEF18, mitochondrial 380 540 - -
Vian9g01507 551 Pfam mTERF 421 523 IPR003690 GO:0003690|GO:0006355
Vian9g01507 551 Gene3D Transcription termination factor 3, mitochondrial 256 544 IPR038538 -
Vian9g01507 551 PANTHER CGI-12 PROTEIN-RELATED 31 531 IPR003690 GO:0003690|GO:0006355
Vian9g01507 551 Gene3D Transcription termination factor 3, mitochondrial 67 207 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01507 Vian-Chr9 31174627 31176282 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian9g01507 mTERF 1.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01507 - - var:108346236 971.844