Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01506 ATGGCTGAAAAAGATGATGGGTTGGGGTTGGGGTTGAGTTTGAGATGGGGAGAAAATGATGATAATAACATGAATGAACAACACCCTTTCAAAATGCACAAACCTCCTCAACCTGTTCCAAACCAAAGGGCTTCTTCTTTCAATAGTTTGTTCCATTTCCATGGTGCCTCTCATGTGACCAATCGAAGCTCTGAGCCACTACCGTTCTTCTTTGGAATAGACGTCAACTTGCCACCTCCACCACCATCGGTGGCACCATGCTACGAGGAGAACGGTGTGTCTTCACCGAACAGTGCAGTTTCGAGCATCAGTGCGAAGAGGAGCGAAAGAGAGGAGAATGAAAGAGGGTCATGTTCTCGAGGAGGAAGCGAAGATGATGATGGCGGAGGGTGTGTTGATGCCGATGGCGACACATCGAGGAAGAAACTGAGGTTGTTGAAAGAACAGGCCTTGGTGCTTGAAGAAACATTCAAGGAACACAACACTCTGAATCCTAAACAAAAGCAAGCTTTGGCAAAGCAGTTGAATCTGAGTCCTAGACAGGTTGAAGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGCTGAAGCAGACTGAAGTGGATTGTGAATACTTAAAGAGGTGCTATGAGAATCTAACGGATGACAATAGGAGGCTACAGAAGGAAGTGCAAGAGCTAAGAGCATTGAAGTTTTCCCCACAGCTCTACATGCACATGAACCCTCCAACCACTCTTACAATGTGCCCTTCCTGTGAGCGTGTTGCTGTCTCATCTGCATCCTCCTCATCGGCCTCCATGCCTTCTGTGCCGCCTTCAGGCAATCACAACCCATTAGGCCCTACCATCCGGCGGCCAGTGCCTGTCAACCCTTGGGCGGCGATGTCAATTCAGCACCGTCCCCCACCATAA 909 0.4862 MAEKDDGLGLGLSLRWGENDDNNMNEQHPFKMHKPPQPVPNQRASSFNSLFHFHGASHVTNRSSEPLPFFFGIDVNLPPPPPSVAPCYEENGVSSPNSAVSSISAKRSEREENERGSCSRGGSEDDDGGGCVDADGDTSRKKLRLLKEQALVLEETFKEHNTLNPKQKQALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYENLTDDNRRLQKEVQELRALKFSPQLYMHMNPPTTLTMCPSCERVAVSSASSSSASMPSVPPSGNHNPLGPTIRRPVPVNPWAAMSIQHRPPP 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01506 302 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 268 - -
Vian9g01506 302 SUPERFAMILY Homeodomain-like 125 197 IPR009057 -
Vian9g01506 302 SMART HOX_1 138 200 IPR001356 GO:0003677
Vian9g01506 302 MobiDBLite consensus disorder prediction 259 286 - -
Vian9g01506 302 Coils Coil 202 229 - -
Vian9g01506 302 SMART halz 196 239 IPR003106 GO:0006355|GO:0043565
Vian9g01506 302 Pfam Homeobox associated leucine zipper 196 229 IPR003106 GO:0006355|GO:0043565
Vian9g01506 302 MobiDBLite consensus disorder prediction 90 104 - -
Vian9g01506 302 Pfam Homeodomain 140 194 IPR001356 GO:0003677
Vian9g01506 302 CDD homeodomain 140 197 IPR001356 GO:0003677
Vian9g01506 302 MobiDBLite consensus disorder prediction 84 137 - -
Vian9g01506 302 MobiDBLite consensus disorder prediction 1 45 - -
Vian9g01506 302 ProSitePatterns 'Homeobox' domain signature. 171 194 IPR017970 GO:0000981|GO:0006355
Vian9g01506 302 Gene3D - 145 194 - -
Vian9g01506 302 MobiDBLite consensus disorder prediction 105 122 - -
Vian9g01506 302 FunFam Homeobox-leucine zipper protein 18 125 201 - -
Vian9g01506 302 ProSiteProfiles 'Homeobox' domain profile. 136 196 IPR001356 GO:0003677
Vian9g01506 302 Pfam HD-ZIP protein N terminus 1 111 IPR006712 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01506 Vian-Chr9 31163128 31165677 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01506 36 300 Homeobox Transcription Factor Family AT3G60390 58.596 3.29e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vian9g01506 HD-ZIP_N 9.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01506 K09338 - gmx:100810641 394.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g01506 9 31163128 31165677 Vian9g01506 9 31163128 31165677 ECH
Vian9g01506 9 31163128 31165677 Vian2g00431 2 5021896 5024366 PCT