Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01502 ATGTCTCTCCACCGCCATGTTTGCAGAACCTCAAAGCTATCAAAGATCCCTAGGAAGTACAAGCAGTTCGCCATAGCACAGGGGCAGAAGTCTGTTACTGATTATCTCCACGCCACGCGCTGCATTCCTTACGCCTTCGCTGATCAAATCTCCAAGAACTCCAACAATGCCCTCATAAATCTCATCACCAAGCTCAGTGCTTTCTCCCCTCCCCACTATCCCCACAACCTCAACAAGTTCCTCAGGTACAACCCCATCAACGAATTCGAGTTCTTCTTTGAGAGCATTGGCATACACCCTTCAAAGTTCCCCTCTTTGTTTCCCCAGAACAAGTTCTTCTTTTCAGAAGATGAGACCCTTTTGGATGCTGCTTATGTTCTCAGCGAATTTGGATTTCCCTGGGACAAGCTTGGAGTGCTGTATGAGGAGAGTGGGTGGGTGTTCAAGTGGGGTGCTTTTGAATTGAATGATAGGCTTTATGGATTCAAAGGGTATGGTTTTTGCAATGTGCAGGTTGTGGGGATATGCTTGGCTTTCCCATTTGTGTTTGATGGCCAGAAGGGTGCTGAGGTTGAGGCTTTGTTTTGTGATCTGAGGTTGCTGTTTGGGAAGTTTGGTTTGGCTGAGTGTGTTGAAGAGAAGGGGAATGGTGTGGATGATTGGGTTGGGTTGTGTAGGAAGATAAGGTTGTTTTATGATTTGAATGGAGGAAATAACATAGGGGAGTTAATTGGAGGGAGCAATGGCGTTGGTGTAGGTGTTGTTGTTGAGCATGGGGAAGAGGAGTTGGTTCAAGCAATTGAGTATTTTTGTAGGTTTGGTGCGAAGAAAGAGGACGTGGCACGATTGATTGTGAATGGACCGGAATTGTTGGAACTTGTTTTGAACATGGGGAAGGTCAATGTGTTGAAGCTGTTGAAACACTTTGGAATGAGTTCCAATGATGTTGATATTGTTAAGAGGGACTATGCTCATGTGTTCGACACAGTCAAGCTGTGTAACCTGCCAAATGTGATGAGAGCTTTGGGTTTACATGAGTGGTTCTTTGAGAAGATTAAGGATGGGAATCATAGTTTGTTGGTTAGTTTTGTCGCGAACAATCGCGAAGTGGTCGGAGATAAAGGTTATCCAAGTTTTTTGAAGGCTATTGAGGTGTCTAAATCTCCAATTCACAATATGAGTAAGTTGAACTTCTTGCATGGCATTGGCTTTGGAGAAAATGCTTTGACCATGTATATTTTCTCTTATATGCACGGAACAAGTGATGAGTTACAAAAGAGATTTGATTGCCTTCTACATCGTGGGATTGAGTTTTCAAAGGTCTGTAAAATGATCACGGTTGATCCCAAGATTCTTCGCCAAAACCCTGAACGTTTGGAGCAAAAGATTAATTTCTTGTGTCAGGAAATGGGACAGTCACTTGAGATTTTGGTGACTTTTCCATCATTCTTGTGCTTTGACTTAGAGAATCGCATTAAGCCCAGGTATAGGTTCCATTTGTGGATTATGGAAAAGGGTCTGTCTTCCAAAAGATATTCTATTGCAAGCATGGTTGCAACAAGCAACAGGAATTTTGTTTCCCGTGCTTTTAAAATCCACCCTGCTGCTCCGAAACATTGGTTTGAGCAATTTATTCCCTGA 1641 0.4314 MSLHRHVCRTSKLSKIPRKYKQFAIAQGQKSVTDYLHATRCIPYAFADQISKNSNNALINLITKLSAFSPPHYPHNLNKFLRYNPINEFEFFFESIGIHPSKFPSLFPQNKFFFSEDETLLDAAYVLSEFGFPWDKLGVLYEESGWVFKWGAFELNDRLYGFKGYGFCNVQVVGICLAFPFVFDGQKGAEVEALFCDLRLLFGKFGLAECVEEKGNGVDDWVGLCRKIRLFYDLNGGNNIGELIGGSNGVGVGVVVEHGEEELVQAIEYFCRFGAKKEDVARLIVNGPELLELVLNMGKVNVLKLLKHFGMSSNDVDIVKRDYAHVFDTVKLCNLPNVMRALGLHEWFFEKIKDGNHSLLVSFVANNREVVGDKGYPSFLKAIEVSKSPIHNMSKLNFLHGIGFGENALTMYIFSYMHGTSDELQKRFDCLLHRGIEFSKVCKMITVDPKILRQNPERLEQKINFLCQEMGQSLEILVTFPSFLCFDLENRIKPRYRFHLWIMEKGLSSKRYSIASMVATSNRNFVSRAFKIHPAAPKHWFEQFIP 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01502 546 Pfam mTERF 421 525 IPR003690 GO:0003690|GO:0006355
Vian9g01502 546 SMART mt_12 442 473 IPR003690 GO:0003690|GO:0006355
Vian9g01502 546 SMART mt_12 474 508 IPR003690 GO:0003690|GO:0006355
Vian9g01502 546 Gene3D Transcription termination factor 3, mitochondrial 255 544 IPR038538 -
Vian9g01502 546 PANTHER CGI-12 PROTEIN-RELATED 30 532 IPR003690 GO:0003690|GO:0006355
Vian9g01502 546 FunFam Transcription termination factor MTEF18, mitochondrial 380 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01502 Vian-Chr9 31132667 31134307 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian9g01502 mTERF 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01502 - - var:108346236 922.924