Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01494 ATGAATTTCAACACCACTCTCGAATCCCATGATTATGCTCTTCTTCAATCCATTCAACGCTTCCTCCTCGACGATACCCAAGACTTAAATGCACTCACGGCAGTTTTGGCCGCACCCAACGCCGTTTCACCTGTGGGGAGCGGCGGCGGATCCACGTCCACCCTTTTCACCACTTCCATCAACATGGAAGAGCGACCAACTACTTCCACGGAGGCGCGTGAGGATCCTACGGCGGCGCGTGGGGAATTCACGGAAGCGGGTGGTGGACACGCGTCTTACCAGAGGTTCAAGGGAGTGAGAAGAAGACCGTGGGGAAAGTTTGCGGCTGAGATAAGAGATCCAAAGAAGAACGGGGCGAGAGTTTGGCTTGGGACTTACGACTCGGCTGAGAGTGCGGCTTTAGCTTACGATCGAGCCGCTTTTGAAATGCGTGGCTCCAAAGCTAAGCTTAATTTTCCTCATTTAATTGGATGCCATGAGCCGAGCCAGAAAGAGAATGGCTAA 504 0.5278 MNFNTTLESHDYALLQSIQRFLLDDTQDLNALTAVLAAPNAVSPVGSGGGSTSTLFTTSINMEERPTTSTEAREDPTAARGEFTEAGGGHASYQRFKGVRRRPWGKFAAEIRDPKKNGARVWLGTYDSAESAALAYDRAAFEMRGSKAKLNFPHLIGCHEPSQKENG 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01494 167 PANTHER DNA-BINDING DOMAIN 72 159 IPR044808 GO:0003700|GO:0009873
Vian9g01494 167 SUPERFAMILY DNA-binding domain 95 154 IPR016177 GO:0003677
Vian9g01494 167 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700|GO:0006355
Vian9g01494 167 MobiDBLite consensus disorder prediction 45 66 - -
Vian9g01494 167 PRINTS Ethylene responsive element binding protein signature 135 155 IPR001471 GO:0003700|GO:0006355
Vian9g01494 167 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Vian9g01494 167 Pfam AP2 domain 95 145 IPR001471 GO:0003700|GO:0006355
Vian9g01494 167 FunFam Ethylene-responsive transcription factor 2 94 154 - -
Vian9g01494 167 Gene3D AP2/ERF domain 94 154 IPR036955 GO:0003700|GO:0006355
Vian9g01494 167 MobiDBLite consensus disorder prediction 42 95 - -
Vian9g01494 167 CDD AP2 94 155 IPR001471 GO:0003700|GO:0006355
Vian9g01494 167 SMART rav1_2 95 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01494 Vian-Chr9 31030107 31030610 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01494 23 161 AP2-EREBP Transcription Factor Family AT2G44840 53.472 8.37e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian9g01494 AP2 9.2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01494 K09286 - gmx:100806359 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g01494 9 31030107 31030610 Vian9g01494 9 31030107 31030610 ECH