Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01493 ATGGCCACCACAACAACAACATCATCGTCATCATGTGATTTCTCATCCTTGGAATCTATTCAACACTATCTTCTTGAGCTCGAACCAGATTGTTCCAACACTCTCATGAGCGTTTACAGTCACCAAGTTTTGCGTTCTCCAATGTACAAACCACTCCCAAGCCCTACTTCGGAGGTTGTCCATGATGCAGATAATAACTTGTTGATAAAGACGCGTGAGGGTCACGCGCCGCCTGTGTGGAAGCGTTTCCGGGGTGTGAGGCGACGGCCGTGGGGGAAGTTTGCTGCCGAGATAAGGGATCCGAAGAGGAATGGTGCGAGAATTTGGCTTGGAACTTATGAAACTGAAGAAGAAGCTGGTTTGGCTTATGATAGAGCTGCATTTAAGATGCGTGGTAGCAAAGCTAAGTTAAATTTTCCTCATCTTATTGATTCTGATGTGTCTCTGAAACCTGTTAGAATGATGAAAGGTTTGAAGCGAAATAACTTTGAATCTTGTTCATCATTTTCACCTCCTTCAGATACAGTAAAAGAATCGAAAAAGAGGAAAAACTTGGCTGAGTTGTTGAATAAGTTGGCCAAGAACAGAAGACGATTGCAGGTGTTTGAAACCAGTTTATACACAAATGATGTTAATGTTCATCTATGTTTTAATTAG 657 0.4216 MATTTTTSSSSCDFSSLESIQHYLLELEPDCSNTLMSVYSHQVLRSPMYKPLPSPTSEVVHDADNNLLIKTREGHAPPVWKRFRGVRRRPWGKFAAEIRDPKRNGARIWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIDSDVSLKPVRMMKGLKRNNFESCSSFSPPSDTVKESKKRKNLAELLNKLAKNRRRLQVFETSLYTNDVNVHLCFN 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01493 218 PANTHER DNA-BINDING DOMAIN 66 181 IPR044808 GO:0003700|GO:0009873
Vian9g01493 218 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Vian9g01493 218 FunFam Ethylene-responsive transcription factor 2 81 141 - -
Vian9g01493 218 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
Vian9g01493 218 CDD AP2 81 142 IPR001471 GO:0003700|GO:0006355
Vian9g01493 218 SUPERFAMILY DNA-binding domain 82 141 IPR016177 GO:0003677
Vian9g01493 218 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Vian9g01493 218 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Vian9g01493 218 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Vian9g01493 218 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01493 Vian-Chr9 31022874 31023530 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01493 46 154 AP2-EREBP Transcription Factor Family AT2G44840 60.000 5.60e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian9g01493 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01493 K09286 - gmx:100527194 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g01493 9 31022874 31023530 Vian9g01493 9 31022874 31023530 ECH