Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01492 ATGGCCAATGATTTGTCTTCAGGTGTTCAATCATTCGAGCTTGAACACGATCCCCAGATTCTTGTAAATGTTTCCGACCAAGAAACCTTTTACTCTTCCTCGTACGAGAATCCTATAGCGAACCCTTGCCATGTCAATGACGCGACTCAATTATTTGCATGCAAAAGGGAAGCACCTGTGGCACCGCGTGAGGAGCACGCGCCGCCGAAGTGGAAGCACTTCCGAGGAGTGAGGAGGCGGCCATGGGGGAAGTTCGCGGCAGAGATATGGGATCCGAAGAGAAAACATGGAAGGGTTTGGCTGGGAACGTATGAGACTGAAGAGGAAGCAGGTTTGGCTTATGATAGGGCTGCTTTCAAGATGAGAGGTAGCAAAGCAAAGTTGAATTTTCCACACCTGATTGGATCCCACGCGCCGCCGGAGAGAGTGGGAGTGGCGGGAGTTTCTCGGAAGCCAAACCTGCCGGAGGCTTGTTTTCCACCTTTGTCTGCGGCGGAGGATGGTTCACAGCCACAAGGGTCAAAGAAGAGGAGAAACCTAGCTGATTTGCTTAATAGGCGCGTGAACTTCACGCGCTTCCCTAGGCTGCTCTCTTCCAGACACTTTCTTCTCATCAATGATATTTTCCATGCCATTAGAGTCCAAGTGTGTGGAACCATGTTCAAGCTCAAGTAG 675 0.5067 MANDLSSGVQSFELEHDPQILVNVSDQETFYSSSYENPIANPCHVNDATQLFACKREAPVAPREEHAPPKWKHFRGVRRRPWGKFAAEIWDPKRKHGRVWLGTYETEEEAGLAYDRAAFKMRGSKAKLNFPHLIGSHAPPERVGVAGVSRKPNLPEACFPPLSAAEDGSQPQGSKKRRNLADLLNRRVNFTRFPRLLSSRHFLLINDIFHAIRVQVCGTMFKLK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01492 224 Gene3D AP2/ERF domain 72 132 IPR036955 GO:0003700|GO:0006355
Vian9g01492 224 ProSiteProfiles AP2/ERF domain profile. 73 131 IPR001471 GO:0003700|GO:0006355
Vian9g01492 224 SUPERFAMILY DNA-binding domain 73 132 IPR016177 GO:0003677
Vian9g01492 224 Pfam AP2 domain 73 123 IPR001471 GO:0003700|GO:0006355
Vian9g01492 224 PANTHER DNA-BINDING DOMAIN 60 164 IPR044808 GO:0003700|GO:0009873
Vian9g01492 224 FunFam Ethylene-responsive transcription factor 2 72 132 - -
Vian9g01492 224 SMART rav1_2 73 137 IPR001471 GO:0003700|GO:0006355
Vian9g01492 224 CDD AP2 72 133 IPR001471 GO:0003700|GO:0006355
Vian9g01492 224 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Vian9g01492 224 PRINTS Ethylene responsive element binding protein signature 113 133 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01492 Vian-Chr9 31010559 31013903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01492 24 136 AP2-EREBP Transcription Factor Family AT2G44840 48.611 2.20e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian9g01492 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01492 K09286 - gmx:100792115 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g01492 9 31010559 31013903 Vian9g01492 9 31010559 31013903 ECH
Vian9g01492 9 31010559 31013903 Vian2g00444 2 5130103 5130750 PCT