Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01491 ATGAACCCTCATGCTTCAAACACCCACTTGAATGCCCCTCATCTCTCCGAGCTCCCTGCAACGATGCCGTTTCAGGATGCGTCGGCGGTGCTCGACCGTACCTCCAGCTTCCGGAGCATTTTCTCCGCCGAGAACTGGGCGGAGCTGCCGCTGAAGGAGGACGACGCTGACGACATGGTTATCTACGGCGCTCTGCTTGAGGCCGCCGCCACCACCGGATGGTTCCCGGCAAATGGCAGTGGGGTGAGCAAAGTACCAGTTAAAAAGGAAAATGGGGGTGAAAGCAGTGGCACCAAAGGCGAGAGTGGAACTCACGCGCCTCCGGTGAAGGGGTTGAGCTACCGAGGCGTGCGGAGGAGGCCGTGGGGAAAGTTTGCGGCGGAGATAAGAGATGCTAAGAGGAATGGTGTGAGAGTGTGGCTTGGAACCTATGAAACTGCTGAGGACGCAGCTTTGGCTTATGATCGAGCTGCGTTTCGAATGCATGGCTCCAAAGCAAAGCTCAATTTTCCACATTTGATTGGTTCGGATGAAGCCGAACCGATTAGGGTTACATCAAAGAAACGTTCGTTGAATGTTTTACCGTTGGTGACTGCAAAACGGAGTAAAGATAATTCTTTGGTTGATTCGGAGATGAATAAGTTGAATATGTGGTAG 657 0.5297 MNPHASNTHLNAPHLSELPATMPFQDASAVLDRTSSFRSIFSAENWAELPLKEDDADDMVIYGALLEAAATTGWFPANGSGVSKVPVKKENGGESSGTKGESGTHAPPVKGLSYRGVRRRPWGKFAAEIRDAKRNGVRVWLGTYETAEDAALAYDRAAFRMHGSKAKLNFPHLIGSDEAEPIRVTSKKRSLNVLPLVTAKRSKDNSLVDSEMNKLNMW 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01491 218 PRINTS Ethylene responsive element binding protein signature 114 125 IPR001471 GO:0003700|GO:0006355
Vian9g01491 218 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Vian9g01491 218 SMART rav1_2 113 177 IPR001471 GO:0003700|GO:0006355
Vian9g01491 218 CDD AP2 114 173 IPR001471 GO:0003700|GO:0006355
Vian9g01491 218 ProSiteProfiles AP2/ERF domain profile. 113 171 IPR001471 GO:0003700|GO:0006355
Vian9g01491 218 Coils Coil 208 218 - -
Vian9g01491 218 MobiDBLite consensus disorder prediction 80 113 - -
Vian9g01491 218 SUPERFAMILY DNA-binding domain 114 172 IPR016177 GO:0003677
Vian9g01491 218 PANTHER DNA-BINDING DOMAIN 91 186 IPR044808 GO:0003700|GO:0009873
Vian9g01491 218 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Vian9g01491 218 FunFam Ethylene-responsive transcription factor 2 113 172 - -
Vian9g01491 218 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01491 Vian-Chr9 31001449 31002105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01491 33 211 AP2-EREBP Transcription Factor Family AT2G44840 51.381 7.52e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian9g01491 AP2 3.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01491 K09286 - gmx:100804762 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g01491 9 31001449 31002105 Vian9g01491 9 31001449 31002105 ECH