Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01464 ATGGATGAGATATATATTATTAGTTCGTCAGATGATGATGAGTTAGAGGAGATAGATGTTCAAAAGAGAACTCTTCCAACAACTAATGAAAGGAGTTCAGATTATGGTCGGCGGGATAATTCTTCAACAGGGGCTAATAGTTCAAACCTAAGTTCTTCTAGTTTGTATAATCATTCACAAATCAAACCTCTTACACTACCTGTGTCCAGTACCAATGCACTAAACCACAGAATTGTGCGAAGAGATGAACCTTCATACCATGCTCAGAATGGAAATACAAGTCCGCAACAACCAGTTAATTCCCGAATTTCAAAGTCTCATGGTGAAGATTATGAGAAAATGTCATCTCATCAAGCTTTCAAGAGGACCCTTCCTTCAACTCTTCAGCCTTCTGTAACAAGGGCTCTTCCTTCTCCTTTATTTGCACCAGACATCCGATTAAGCAACTTAAAAGATAGCACAGACAATAGTCATCTTCATGATACATATAAGAATCGTCGCCAGGGAATAGGGCCTAGCATATCCGGTGATAGGGCCTACATTCGTGATAGTTTTATCAGGGGCTATGACGAAGGTCATTTATTGTATCAAAATGGTGGGAACAGGATTCTTCCATCATCTTTGGTGTTTGGAAAGGCCATAACTCCACACTTTGCAATTCCTAGTGAATCTGCGTATCGTTCTGGAATAGGTGATGAAAGGTCAGCCGAAAATGACGAGAGACTTATTTATGAGGCAGCATTACAGGATATCAGTCAACCTAAAACAGAATATGACTTACCTGCTGGTGTATTGTCTGTCTCTCTTCTGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAGGGAAACCAAAAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAGACAGTATCAATGATTTCCCTCATTCTGGCATTGAGGTCATTACAGTCAAAATCAAAAACAGATGATGTGTTCAATCATAAAACTGAAGCTTTGAATTTGGATGACGATGATGACAATGGTGGTATAGATGTGGAAAAGCATAAAAATAGTATGGAAGCTGATGATTTGTTTCCTAGTAGAGAACCTAGCAGTTCAACACAGACACCTGGTAGAAAAAGGCCAGCTGCTGGTACCCTAGTTGTCTGCCCTGCCAGTGTTATGCGACAGTGGGCCAGGGAACTTGATGAGAAAGTTGGAGATGAAAAGCTTTCTGTTTTAGTTTATCATGGGGGCAGTAGGACTAAGAATCATGTTGAACTTGCAAAATTTGATGTGGTTCTAACAACATACTCTATTGTGACTAATGAAGTTCCTAAGCAACCATTAGTTGAGGATGACGATATTGAGGACAAAAATGGGGAAAGATTTGGGTTATCTTCTGAGTTTTCTGTTAAAAAAAGGAAAAAACAATTTAACGGAAATAAGAAGGGTAAAAAGGGTAGAAAAGGAATTGACAGTTCTACGGAATGTGGTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAGGCTCAAACAATAAAAAATCACAGAACTCAGGTGGCTAGAGCTTGCTGCAGCCTTAGAGCAAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGATTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTCTACAACACCATAAAGGTTCCTATATCCCGAGATTCCATTCAAGGTTACAAGAAACTTCAAGCAGTTTTAAGGGCCATAATGCTACGTCGTACAAAAGGAACTTTGCTTGATGGGAAGCCAATAATCAATTTGCCTCCTAAAACAATTGAGCTCAGTAAAGTGGATTTCTCCATTGAGGAGCGAGCCTTCTATACTAAGTTGGAATCAGACTCACGCAATCAATTTAATGCATATGCTGCTGCTGGGACAGTCAATCAAAACTATGCTAATATTCTTTTAATGCTCTTACGTCTCCGACAGGCTTGTGATCATCCACGTCTTGTTAAAGATATTGATTCGGATCCTGTTGGGAAGGATTCTGTTGAAATGGCAAAAACTCTTCCAAGGGAATTGCTGATTAATCTGTTTAATTGTTTGGATGCAACCTTTACTATCTGTCATGTTTGCAATGATCACCCTGATCGCCCTGTTATTACCATGTGTGGCCATGTCTTCTGTTATGAATGTGTACAGGAATATTTGTCTGGTGATGATAATACTTGCCCTGCTGTTAATTGTAAAGAAACAATCGGTGATGATCTTGTTTTCTCCAAAGTTACTTTGAAGAGTTGTATCTCTGATGAGGGAGGCACTTCTAGTTCTTCAAATTCACATCTTAGTGATTATTCGCAAGTGCAGCGGGATGATTACACTTCATCTAAAATCAAAGCTGTTCTTGAGGTTTTGCAGTCAAATTGTAACGTGAAAATATCCAATTCTGACTTACAGAACTCTGGATGTTGTAGAAATTCCCCGTCGTCTTCTGTTGATCTAGATGTTGATGACAGTGATTCAGAGGCTAGGGTTGCAAAACACACGAGAAAGTATTCAGGGTCTACAACCGAAGGATCGATAAAGGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGATTTAGTTGAGACATCATTGTGTCAATATGGTATAGTGTACAGGAGACTTGATGGTAGGATGACTCTGGGTGCAAGGGACAAAGCTGTTAGGGATTTCAATTCTGAACCTGAGATAACTGTCATGCTGATGTCACTAAAGGCGGGAAACCTTGGTTTGAATATGGTTGCTGCTTGTCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCTATTGATCGAGCCCATAGAATTGGACAAACTCGTCCTGTTACTGTGACAAGGATTACTATAAAAGATACCGTTGAAGATCGGATACTGTCTCTTCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCTTTTGGGGAAGACCATGCTGGTGGGTCTGGAACTCGCCTTACAGTGGATGATCTGAAATATCTCTTCATGGTCTAG 3057 0.3981 MDEIYIISSSDDDELEEIDVQKRTLPTTNERSSDYGRRDNSSTGANSSNLSSSSLYNHSQIKPLTLPVSSTNALNHRIVRRDEPSYHAQNGNTSPQQPVNSRISKSHGEDYEKMSSHQAFKRTLPSTLQPSVTRALPSPLFAPDIRLSNLKDSTDNSHLHDTYKNRRQGIGPSISGDRAYIRDSFIRGYDEGHLLYQNGGNRILPSSLVFGKAITPHFAIPSESAYRSGIGDERSAENDERLIYEAALQDISQPKTEYDLPAGVLSVSLLRHQKIALAWMLQRETKSLHCLGGILADDQGLGKTVSMISLILALRSLQSKSKTDDVFNHKTEALNLDDDDDNGGIDVEKHKNSMEADDLFPSREPSSSTQTPGRKRPAAGTLVVCPASVMRQWARELDEKVGDEKLSVLVYHGGSRTKNHVELAKFDVVLTTYSIVTNEVPKQPLVEDDDIEDKNGERFGLSSEFSVKKRKKQFNGNKKGKKGRKGIDSSTECGSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRDSIQGYKKLQAVLRAIMLRRTKGTLLDGKPIINLPPKTIELSKVDFSIEERAFYTKLESDSRNQFNAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDIDSDPVGKDSVEMAKTLPRELLINLFNCLDATFTICHVCNDHPDRPVITMCGHVFCYECVQEYLSGDDNTCPAVNCKETIGDDLVFSKVTLKSCISDEGGTSSSSNSHLSDYSQVQRDDYTSSKIKAVLEVLQSNCNVKISNSDLQNSGCCRNSPSSSVDLDVDDSDSEARVAKHTRKYSGSTTEGSIKAIVFSQWTSMLDLVETSLCQYGIVYRRLDGRMTLGARDKAVRDFNSEPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILSLQEEKRKMVASAFGEDHAGGSGTRLTVDDLKYLFMV 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01464 1018 CDD SF2_C_SNF 861 969 - -
Vian9g01464 1018 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 46 1017 - -
Vian9g01464 1018 MobiDBLite consensus disorder prediction 1 15 - -
Vian9g01464 1018 CDD DEXDc_SHPRH-like 269 596 - -
Vian9g01464 1018 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 477 608 - -
Vian9g01464 1018 SMART helicmild6 877 960 IPR001650 -
Vian9g01464 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 596 IPR027417 -
Vian9g01464 1018 SMART ring_2 712 750 IPR001841 -
Vian9g01464 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 1017 IPR027417 -
Vian9g01464 1018 SUPERFAMILY RING/U-box 710 770 - -
Vian9g01464 1018 MobiDBLite consensus disorder prediction 472 491 - -
Vian9g01464 1018 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 847 1013 IPR001650 -
Vian9g01464 1018 Gene3D - 366 452 IPR038718 -
Vian9g01464 1018 MobiDBLite consensus disorder prediction 86 104 - -
Vian9g01464 1018 MobiDBLite consensus disorder prediction 334 358 - -
Vian9g01464 1018 Gene3D - 611 1017 IPR027417 -
Vian9g01464 1018 ProSiteProfiles Zinc finger RING-type profile. 712 751 IPR001841 -
Vian9g01464 1018 Pfam SNF2-related domain 272 674 IPR000330 GO:0005524|GO:0140658
Vian9g01464 1018 SMART ultradead3 265 575 IPR014001 -
Vian9g01464 1018 Pfam Zinc finger, C3HC4 type (RING finger) 711 756 - -
Vian9g01464 1018 MobiDBLite consensus disorder prediction 148 173 - -
Vian9g01464 1018 ProSitePatterns Zinc finger RING-type signature. 727 736 IPR017907 -
Vian9g01464 1018 Gene3D - 243 330 IPR038718 -
Vian9g01464 1018 Gene3D - 469 609 IPR038718 -
Vian9g01464 1018 MobiDBLite consensus disorder prediction 38 55 - -
Vian9g01464 1018 MobiDBLite consensus disorder prediction 334 379 - -
Vian9g01464 1018 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 362 449 - -
Vian9g01464 1018 Pfam Helicase conserved C-terminal domain 863 960 IPR001650 -
Vian9g01464 1018 MobiDBLite consensus disorder prediction 85 118 - -
Vian9g01464 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 705 762 IPR013083 -
Vian9g01464 1018 MobiDBLite consensus disorder prediction 151 165 - -
Vian9g01464 1018 MobiDBLite consensus disorder prediction 1 55 - -
Vian9g01464 1018 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 284 558 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01464 Vian-Chr9 30593458 30602025 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01464 1 918 RAD5 or RAD16-like Gene Family AT1G50410 53.928 0.0 897
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vian9g01464 SNF2_N 1e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01464 - - gmx:100811598 1608.96