Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01461 ATGGAGGGTGAGAGAAACATAATAACTTATAAAAGAGCTAATTCCTCTTTAAATCCTAAGCGGCCTTTGAAATCTTCTAGCACATTAAAGGGGGGACAGAAGAAGAACGGTCTACATCCCAAGTCACAGATTCTTAAAGAGTCACCAGCCAGCAACAAATGTAATAATGTTCCACAAAATGTTGATCAATTTAAAAATAATCAGAAACTTGCAACGAGGAAGCAAAATCATAAAGAGAATAAGGCAGAAAATATTCCCGCTACTACTAAGGTGGAGAAAAAAGCATATCCATCCTTTGAAGCTTTTACAATAGAGGAAGAAGAAGGTTCAGGTGGTTATGGCACTGTTTACCGTGCTCAAAGAACTACCGATGGAAAACGGGTTGCAATAAAATGTCCTCATAGTAATGCTCACATAAATCACGTAACTACTGAACGGAATATGCTCGAGCGTTTTGGTGGTAAAAACTTCATAATAAGATACGAAGGTTCTTTGAAAAATAACAATACCGAATGCTTTGTTTTAGAGCATGTTGAGCACGAGAGACCTGAGGTATTGAAAAAGGAAATTGATTTATTACAGATTCAATGGTACGGTTATTGCCTGTTCAGGGCCCTTTATTGTTTGCACAAAGAGGGAGTTGTTCACAGAGACGTTAAACCTGGAAACTTCCTTTTCTCTCGAAAGCAAAGCAGAGGTTACCTTATTGATTTCAACCTAGCCATGGATTTGAAGCAGAAGAACAAAGTTGGAAGTAAATCAAAACCCAACCTGGTTGCATCATCCCATAATGTTTCTTCTCTTTCTTCTCGTTCTGCTCCTTTGGTCCGAGGCAAGAACCTTGGAGGCAGCAAGTCTTTAACATCCAATAAAAGAGCTTTGGCGGATTATAAGAATTATTCTGAACTTAATAGGCATGTAAAACAAAAGGCTTTTACTGGTCCTCAGAAAAATCGTCCCGACATGGTTGGTGGGAGTTTTCCTAGAGCACAAGGAACAGACGGCTCGGGTATAACTTCTGCTAGAGATGCTAGCACTAGGACTGCTTCTGCAGAGAGGCTCAGGGAACCTTTACCTTCCCACGGAAGAAAGGAACTTATCAGCTTTGTGAATACTATGAAATATACAAACAACAGTTCAATAACAGGTCCTTCCTCTCAAAGGAAAAGAGTTACTGCTCCCTCAAGCAGAGTAGATAGCAAGATTTTTCATATTACCCCAATGCCTCTGCATTCATCTACAGTTGGTGCGGTATTGAGAAGCAAAGGAGATGGAAAACAGAAAAAAGAAGGTTCATGTGTTGGAACCAAAGGATTCCGTGCACCGGAGGTTTTGTTAAGATCTCAGCATCAGGGACATAAGATTGATATTTGGTCAGCTGGCGTTACTCTACTCTACATGGTGATAGGAAAGACTCCTTTCACTGGCGACCCGGAACAGAACATAAAAGAAATTGTAAAATTGCGGGGAAGTGAAGAGTTTTGGGAAGTGGCCAAGCTACATAACCGTGAAGTGTCTTTTCCTGAGGAGTTACTTGATGAGCGATACTTGCAGTCATGGGACTTGGGAGCCTGGTGCAAAACTCACACAAAGAGACCAGAATTTCTTGAACAGATCCCGAAATCGTTGTTTGATTTGATAGACAAGTGTCTAACAGTTAATCCAAGAAATAGACTTAGTGCTGAAGATGTTTTGAGACATCAATTCTTTGACTCATTAAACGACTCTCTTAGGAAGCAAAGGATGATGCAACGTGCTATCAGATCAGAGGCTGCAGCAGCTTCTGCTGCAATCTAA 1797 0.4062 MEGERNIITYKRANSSLNPKRPLKSSSTLKGGQKKNGLHPKSQILKESPASNKCNNVPQNVDQFKNNQKLATRKQNHKENKAENIPATTKVEKKAYPSFEAFTIEEEEGSGGYGTVYRAQRTTDGKRVAIKCPHSNAHINHVTTERNMLERFGGKNFIIRYEGSLKNNNTECFVLEHVEHERPEVLKKEIDLLQIQWYGYCLFRALYCLHKEGVVHRDVKPGNFLFSRKQSRGYLIDFNLAMDLKQKNKVGSKSKPNLVASSHNVSSLSSRSAPLVRGKNLGGSKSLTSNKRALADYKNYSELNRHVKQKAFTGPQKNRPDMVGGSFPRAQGTDGSGITSARDASTRTASAERLREPLPSHGRKELISFVNTMKYTNNSSITGPSSQRKRVTAPSSRVDSKIFHITPMPLHSSTVGAVLRSKGDGKQKKEGSCVGTKGFRAPEVLLRSQHQGHKIDIWSAGVTLLYMVIGKTPFTGDPEQNIKEIVKLRGSEEFWEVAKLHNREVSFPEELLDERYLQSWDLGAWCKTHTKRPEFLEQIPKSLFDLIDKCLTVNPRNRLSAEDVLRHQFFDSLNDSLRKQRMMQRAIRSEAAAASAAI 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01461 598 MobiDBLite consensus disorder prediction 249 287 - -
Vian9g01461 598 PANTHER OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED 43 585 - -
Vian9g01461 598 SUPERFAMILY Protein kinase-like (PK-like) 89 575 IPR011009 -
Vian9g01461 598 Gene3D Transferase(Phosphotransferase) domain 1 63 266 - -
Vian9g01461 598 MobiDBLite consensus disorder prediction 308 353 - -
Vian9g01461 598 MobiDBLite consensus disorder prediction 9 33 - -
Vian9g01461 598 Gene3D Transferase(Phosphotransferase) domain 1 411 597 - -
Vian9g01461 598 FunFam Kinase like protein 410 581 - -
Vian9g01461 598 SMART serkin_6 102 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01461 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Vian9g01461 598 MobiDBLite consensus disorder prediction 251 274 - -
Vian9g01461 598 FunFam Probable serine/threonine-protein kinase DDB_G0291918 94 257 - -
Vian9g01461 598 ProSiteProfiles Protein kinase domain profile. 102 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01461 598 Pfam Protein kinase domain 429 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01461 598 Pfam Protein kinase domain 104 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01461 598 MobiDBLite consensus disorder prediction 1 55 - -
Vian9g01461 598 MobiDBLite consensus disorder prediction 332 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01461 Vian-Chr9 30545139 30549734 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01461 434 576 Core Cell Cycle Gene Families AT2G38620 33.113 2.53e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-2 Vian9g01461 Pkinase 3.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01461 K02214 - gmx:100783107 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g01461 9 30545139 30549734 Vian9g01461 9 30545139 30549734 ECH