Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01432 ATGGATGAATCATGGGAAAAATGGTTTTCTGATTTAGAAATGGATGATGATGAGTTGCGTTTGTTCAACGAACACGACGTGAACTCTCTTGAGGAAGAATTGATGAAGGGAGAGAGTTCAGTGCCTTATGATTCAGATTTTGCTATCAACAACAACAACAACATGGAAAATCTTTCATGTTTGGAAACGAACACGAATTCTAGTTCGGAGAAGAACCATGAATTTTCATCCTGCACTCTCTCTTTCGAGAACTCCACTGTTGTGTCAAATGATGCTGATGAAGCATTCCATGCGAAGCAAAAGAAAAGCACTTTTCAGACGCAGCTGCATATAATGTCTGAGAGGAAGAGGAAGAGGAGAGAGAAAATCAGCACTATGAGGGAAATGGGTGATGATGAGTTTCATTTGTTCGTTGAACACGAGATGAACTCTCTCGAGGAAGAATTGATGAAGGGAGAGAGTGGTTCAGGTTTTGGTATCAACAAAAACAACAACAACATGGGCGATGGTTCGTGTTTGAAAAAGAACACACAACGTGCGAATTCTGGTTCGGAGAAACAGGTATTTTCATCCTGCACTCTCGCTTTTGAAGACTCCACTGTGGTTTCAAATGTTGCTGATGCAGCATTCCATGCAAAGCCTGAAAAGAAAAGAAGCACTTTTCAGACGGAACAGCACATCATGGCTGAGAGGAAGAGGAGAGAGAAAATCAGCACTATGATGATAGAACTTTCAACCATGCTTCCTGGTTTGAAAAAGTTGGACAAGATATCTATCGTTGGAAAAACGATCGATTATGTGAAACATTTAGAGAATCGTGTAAATGATTTGCAAGAACAGAAACGTAAAGATGTAAGAATCAGAGTTATTTGTGACAGACGAGAAAACATTGTAACAAAGCTATTTTCGAAGCTTGAATCTCACCATCTCTCCATAGTTTGTAGCAGTGTTCTGCCATTGGGAAGTTCTGCTCTAAACATTTCTATCATTTGCCAGGTGGAACATTTCAGCATGGCAGTAGATGACTTAGTGAATATTTTAAATGAGGATTTATTGAAATTATATAACTTGCAATAA 1077 0.3909 MDESWEKWFSDLEMDDDELRLFNEHDVNSLEEELMKGESSVPYDSDFAINNNNNMENLSCLETNTNSSSEKNHEFSSCTLSFENSTVVSNDADEAFHAKQKKSTFQTQLHIMSERKRKRREKISTMREMGDDEFHLFVEHEMNSLEEELMKGESGSGFGINKNNNNMGDGSCLKKNTQRANSGSEKQVFSSCTLAFEDSTVVSNVADAAFHAKPEKKRSTFQTEQHIMAERKRREKISTMMIELSTMLPGLKKLDKISIVGKTIDYVKHLENRVNDLQEQKRKDVRIRVICDRRENIVTKLFSKLESHHLSIVCSSVLPLGSSALNISIICQVEHFSMAVDDLVNILNEDLLKLYNLQ 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01432 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 270 IPR011598 GO:0046983
Vian9g01432 358 PANTHER BHLH TRANSCRIPTION FACTOR 283 353 - -
Vian9g01432 358 Coils Coil 267 287 - -
Vian9g01432 358 SMART finulus 227 276 IPR011598 GO:0046983
Vian9g01432 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 224 282 IPR036638 GO:0046983
Vian9g01432 358 Gene3D - 211 285 IPR036638 GO:0046983
Vian9g01432 358 Pfam Helix-loop-helix DNA-binding domain 224 271 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01432 Vian-Chr9 30230193 30234659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01432 210 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 29.897 9.97e-20 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian9g01432 HLH 4.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01432 - - vum:124834675 650.203