LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian9g01428	ATGCTCCGCCGCGCAACCTCCGCCCTCCTCTCCGGAGCCTCCCGCCGGCGCTTGTCCACCGACGTACCGGCAACGCCCTCGGCGGAATCGAGCTTCGTGGAGGCGTGGAAGAAAGTGAGCCCGAATCTGGATCCTCCGAAGACGCCGCTCTCGTTCTTGAAGGAGCGGCCGCCGATTCCCTCGACCCTCCCTTCCAAACTCACAGTCAACTTCGTCCTCCCCTACGCTTCCCAATTGTCCGCAAAAGAGGTTGACATGGTGATTGTACCAGCAACAACTGGGCAGATGGGTGTTCTGCCAGGACATGTAGCAACAATTGCTGAGTTGAAACCTGGTGTCCTCTCTGTTCATGAAGGGAACGATGTGACAAAGTATTTTGTCAGCAGTGGCTTTGCATTCGTCCACGCGAACTCTGTTGCTGACATAGTAGCTGTTGAGGCCGTGCCGATAGATCGGATTGATGCAAATCTTGTTCAGAAGGGCCTTCAAGATTTCACCCAGAAGCTCAACTCAGCCTCAACTGACTTGGAGAAAGCTGAGGCTCAGATTGGGGTGGACGTCCACAGCGCTCTCAACTCTGCTCTTACAGGCTGA	594	0.5539	MLRRATSALLSGASRRRLSTDVPATPSAESSFVEAWKKVSPNLDPPKTPLSFLKERPPIPSTLPSKLTVNFVLPYASQLSAKEVDMVIVPATTGQMGVLPGHVATIAELKPGVLSVHEGNDVTKYFVSSGFAFVHANSVADIVAVEAVPIDRIDANLVQKGLQDFTQKLNSASTDLEKAEAQIGVDVHSALNSALTG	197

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian9g01428	197	SUPERFAMILY	Epsilon subunit of F1F0-ATP synthase N-terminal domain	67	148	IPR036771	-
	Vian9g01428	197	FunFam	ATP synthase delta	56	153	-	-
	Vian9g01428	197	Coils	Coil	162	182	-	-
	Vian9g01428	197	PANTHER	ATP SYNTHASE DELTA/EPSILON CHAIN	26	197	IPR001469	GO:0015986\|GO:0045261\|GO:0046933
	Vian9g01428	197	CDD	F1-ATPase_delta	67	190	IPR001469	GO:0015986\|GO:0045261\|GO:0046933
	Vian9g01428	197	Hamap	ATP synthase epsilon chain [atpC].	65	185	IPR001469	GO:0015986\|GO:0045261\|GO:0046933
	Vian9g01428	197	Gene3D	-	58	153	IPR036771	-
	Vian9g01428	197	Gene3D	-	154	196	-	-
	Vian9g01428	197	Pfam	ATP synthase, Delta/Epsilon chain, beta-sandwich domain	67	139	IPR020546	GO:0015986
	Vian9g01428	197	MobiDBLite	consensus disorder prediction	1	24	-	-
	Vian9g01428	197	NCBIfam	ATP synthase F1 subunit epsilon	72	182	IPR001469	GO:0015986\|GO:0045261\|GO:0046933

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian9g01428	1	197	Primary Pumps ATPases	AT5G47030	68.687	1.36e-99	285

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian9g01428	K02134		-	gmx:100780778	358.221

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian9g01428	9	30147135	30149492	Vian9g01428	9	30147135	30149492	ECH