Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01415 ATGGGAACAAAGGCAAAGAAAGCTATGAAGAAGAACATGAAAAAGGCTTCCTCTAACAAGCCATCTGAGGGTGCTGATTTTTTGCCCTTGGAAGGTGGTCCTGCTCGCAAGCTCGCCGAACAGAAGCCGCCGGAGAATACCTCCACGGTATTGTACGTATCCAGGATTCCGCATGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGTCAATTTGGAACCATCAAAAGGTTGAGAATCGCGAGAAATAAAAAGACAGGAAAATCAAGACATTTTGGGTACATAGAATTTGAATCTCCTGAGGTTGCGAAAATTGTAGCTGATACTATGCACAATTATCTCCTTTTCGAGCACCTTCTCCAAGTTCATGTTGTACCTCCGGAGAATGTTCATTCAAGATTATGGAGAGGATTCAGTTATCGTCACAAGCCATTGGATTATGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACCTTAGACGAGCACAAAAAATTGGTGGAGAGGATTCTAAAACATGACCAAAAACGACGGAAAAGGATAGAGGCTGCTGGCATTGATTACGAAAGCCCTGAGATTATGGGTAACATCCAGCCTGCTCCAAAGAAAATAAAGTTTGATGACTGA 630 0.4254 MGTKAKKAMKKNMKKASSNKPSEGADFLPLEGGPARKLAEQKPPENTSTVLYVSRIPHGFYEKEMEGYFGQFGTIKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEHLLQVHVVPPENVHSRLWRGFSYRHKPLDYVQIERKRHDKERTLDEHKKLVERILKHDQKRRKRIEAAGIDYESPEIMGNIQPAPKKIKFDD 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01415 209 CDD RRM_NIFK_like 50 123 - -
Vian9g01415 209 Coils Coil 147 167 - -
Vian9g01415 209 Gene3D - 3 124 IPR012677 -
Vian9g01415 209 SMART rrm1_1 50 123 IPR000504 GO:0003723
Vian9g01415 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Vian9g01415 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 118 IPR000504 GO:0003723
Vian9g01415 209 SUPERFAMILY RNA-binding domain, RBD 32 137 IPR035979 GO:0003676
Vian9g01415 209 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 6 208 - -
Vian9g01415 209 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01415 Vian-Chr9 29910583 29912554 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01415 49 122 Eukaryotic Initiation Factors Gene Family AT1G71770 32.432 3.85e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01415 K14838 - gmx:100814276 360.533