Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01407 ATGAATTTGTTGTCTTTGGCAGAGCTAAAAAGTCAGTTTTGGACTTCATGGCAGCCATTAGAATCACCATGCTTGTTGGAGCATGTGATTTTACCTGTGGAACTCGGGTTCTCTGTGATCTTGTTAGTCCAACTCCTGAGAAAATATGTGAGCCTGATCAGAAAGCAAACCAAGGTTCCAGATGGTGCCACAAAATCGATGCATCCACCAGCAATCAAACATGGTTTTGCTTACAAAATCAGCATTGTCTCCAACACACTGTTGCTGGCTGTTCATGCATCACTGCTGCTACTGATGCTGAATCAAGAGACTCAATGCACCTCAAAACTTCAGGCTTTCACATCAGAAATAGTTCAAGTGTTATCATGGGTAACTAGTCTTGTAGCAATATGCAAGATATCAAAATCAAGCACACATTTCCCTTGGATTCTGAGGGCTTGGTGGCTTTGCAGTTTCATTGTGTGCATTATAAGCACAGGCCTTCATGTTCATTTCAGTGTCACCAACAGTGGTCAGATTAGCATCAGAGAATATGCAGATTTCCTTGGTTTGCTTGCTTCAACATGCCTTCTGGTTATTTCCACAAGTGGGAAGACAGGCACTGTGATGCTTGCCACAAATGGTGCAGCTGAACCACTTCTTGGGGAGAAAACTGAGAAACATTCAGAGTGTCTAAGGGAATCTCCATACGGAAAAGCCTCACTTCTCCAACTCATTAATTTCTCATGGCTTAACCCCTTGTTTGCAATAGGGTATAAGAAACCCCTTGAACAGAGTGACATTCCTGATGTTGACATCAAAGACTCTGCTGAGTTTCTGACCTGTTCCTTTGATGAGAGCCTTAGAAAAGTCAAGGAGGAAGATGGCACTGCAAACCCTTCTATCTACAAGGCAATCTACCTGTTCGCTAGGAAGAAAGCAGCAATGAATGCATTGTTTGCAGTGGTAAATGCTTCAGCATCTTATGTTGGTCCTTACTTGATAACAGACTTTGTGGATTTCTTGGGAGAGAAGGAAACTCGTGGTTTGAAGAGTGGATACCTTCTGTCACTGGCTTTTCTCTGTGCCAAAATGGTTGAGACCATAGCTCAGAGGCAATGGATTTTTGGAGCTAGGCAATTAGGCCTTCGCCTCAGAGCTGCGTTGATATCTCATATATATCAGAAGGGTCTGCATCTGTCGAGTAGATCGCGCCAAAGTCACACGGGTGGTGAGATAATGAACTACATGAGTGTAGATGTGCAGAGAATCACAGATTTTGTTTGGTATGTAAATGTCATATGGATGCTGCCAATACAAATTTCCTTAGCAGTGTTCATTCTGCATACAAATCTAGGACTAGGTTCATTGGCTGCACTAGCTGCTACGTTGGGAGTGATGACTTTGAACATACCTCTAACAAAAATACAGAAAAGATACCAAGCCAAGATCATGGATGCCAAGGACAACAGGATGAAAGCCACTTCAGAAGTCCTCAGAAACATGAGGACTCTGAAGCTTCAAGCATGGGACACTCAATTTTCTCAAAGGGTAGAAGCACTGAGGAATGTAGAGTATAATTGGCTAACAAAGTCCTTGAGGCAAGCAGCGTTTTCTGCTTTTATCTTTTGGGGATCACCTACATTCATCTCTGTGATAACTTTTTGGGCATGCATGTTCATGGGGATTGAACTGACAGCAGGAAGGGTCTTGTCTGCATTTGCCACGTTCAGAATGCTGCAGGATCCTATATTCAGCTTGCCTGATTTGCTCAATGTGATTGCTCAAGGAAAAGTCTCTGTTGATAGGATCGCTTCCTTCCTTCGTGAGGAAGAAATCCAGCATGATGTCATTGAAAATGTTGCAAAGGAGAGAACAGAATTTGATGTAGTTATTGAGAGAGGGAGATTCAGCTGGGATCCTGATTCAACAACTCCAACCATTGATGAAATAGAGTTGAAAGTTAAGAGGGGAATGAAGGTGGCAGTTTGTGGATCTGTAGGTTCAGGAAAGTCTAGTCTGCTATCAGGCATTTTGGGAGAAATATATAAACAGTCTGGGAATGTGATGCAAAATGGAAGGATAGCACAAGCTGGAAAATTTGAAGATCTTCTAAAGCAAAATATAGGATTTGAAGTTTTAGTTGGTGCTCACAGCAAAGCTCTGGAGTCAATTGTTGTTGCTGAAAACTCAAGTAGAACAAGTTTCAATTCAATAGCTGAGGAAGGTGAATCCAACTTCAACTCCAAGTCAAGTCTTCAGCATGACAAAGTGCAAGACAATCCTCCAGAGGACAAAGGAAATGATGGAAAGTTGGTGCAAGAAGAGGAAAGAGAAACAGGAAGCATAGCAAAAGAAGTTTACTGGACTTATTTGACCACTGTCAAAGGAGGAATGTTTGTTCCTCTCATTATCTTGGCACAATCTTCATTCCAAATACTTCAGATTGCCAGTAACTATTGGATGGCTTGGGTTTGCCCCACAAGTAGTGATGCCAAGCCTATATATGACATGAATTTCATACTACTTATTTATATGGCACTCTCAGTTGCTGGTTCATTCTGTGTTCTGCTGCGAGCCATGATGGTGTTAAATGCTGGACTTTGGACATCACAGACACTTTTCACAAAGATGTTGCATAGTGTGCTCCGTGCCCCCATGTCCTTTTTTGATTCTACCCCAGCTGGAAGAATCTTGAATAGGAGATATTACACCCCTACAGCTAGAGAACTGGCTCGCTTAGCACAGATACAGATCACTCCAATTCTCCACCATTTTTCAGAATCTTTGGCAGGAGCAGCATCAATAAGAGCTTTTGATCAAGAGGGCCGTTTCATATACACCAATCTTGTCCTTGTGGATGGCTTCTCAAGACCATGGTTTCATAATGTTTCTGCAATGGAATGGCTTTCTTTCAGATTGAATTTACTGTCAAATTTTGTTTTTGCCTTCTCACTGGTCATGCTTGTGAGCCTCCCTGAAGGAATAATCAACCCAAGTATTGCAGGACTGGCAGTAACATATGGGATCAATTTGAATGTGCTGCAAGCTTCAGTTATATGGAACATATGCAACGCAGAAAACAAGATGATATCAGTTGAAAGAATTATTCAGTACACAAATATAAAAAGTGAAGCACCTCTTGTGATTGAAGACAGCAGGCCACCAAGCAACTGGCCAGAAACTGGAACAATATGTTTCAAAAATTTACAGATACGTTATGCTGAACATCTGCCATCTGTGTTGAAAAACATCACTTGCACATTTCCTGGGAGGAAGAAAGTTGGTGTTGTTGGGCGTACTGGGAGTGGAAAATCAACCCTCATACAAGCCATTTTCAGGATTGTTGAACCAAGAGAAGGAAGCATTATCATTGACAATGTTGATATATGCAAGATAGGCCTCCATGACTTAAGGTCAAGGCTTAGCATTATCCCACAAGACCCTGCCTTGTTTGAAGGCACTGTCAGAGGAAACCTGGACCCTCTTCAGCAATACTCTGACATTGAAGTGTGGGAGGCTCTAGACAAATGTCAACTGGGCCACCTAGTGAGGGCCAAGGAAGAGAAGTTGGAGTCCCCAGGGAGAATTGCAGAGTATGATGAACCATCAAGGTTACTTGAGAGAGAAGATTCCTTCTTCTTTAAACTAATAAAGGAGTATTCTGGAAGATCACAAAGCTTAAACAGTTTGGCAATACAACATGTCCAAAGTAGGGAACAATTATAG 3708 0.4204 MNLLSLAELKSQFWTSWQPLESPCLLEHVILPVELGFSVILLVQLLRKYVSLIRKQTKVPDGATKSMHPPAIKHGFAYKISIVSNTLLLAVHASLLLLMLNQETQCTSKLQAFTSEIVQVLSWVTSLVAICKISKSSTHFPWILRAWWLCSFIVCIISTGLHVHFSVTNSGQISIREYADFLGLLASTCLLVISTSGKTGTVMLATNGAAEPLLGEKTEKHSECLRESPYGKASLLQLINFSWLNPLFAIGYKKPLEQSDIPDVDIKDSAEFLTCSFDESLRKVKEEDGTANPSIYKAIYLFARKKAAMNALFAVVNASASYVGPYLITDFVDFLGEKETRGLKSGYLLSLAFLCAKMVETIAQRQWIFGARQLGLRLRAALISHIYQKGLHLSSRSRQSHTGGEIMNYMSVDVQRITDFVWYVNVIWMLPIQISLAVFILHTNLGLGSLAALAATLGVMTLNIPLTKIQKRYQAKIMDAKDNRMKATSEVLRNMRTLKLQAWDTQFSQRVEALRNVEYNWLTKSLRQAAFSAFIFWGSPTFISVITFWACMFMGIELTAGRVLSAFATFRMLQDPIFSLPDLLNVIAQGKVSVDRIASFLREEEIQHDVIENVAKERTEFDVVIERGRFSWDPDSTTPTIDEIELKVKRGMKVAVCGSVGSGKSSLLSGILGEIYKQSGNVMQNGRIAQAGKFEDLLKQNIGFEVLVGAHSKALESIVVAENSSRTSFNSIAEEGESNFNSKSSLQHDKVQDNPPEDKGNDGKLVQEEERETGSIAKEVYWTYLTTVKGGMFVPLIILAQSSFQILQIASNYWMAWVCPTSSDAKPIYDMNFILLIYMALSVAGSFCVLLRAMMVLNAGLWTSQTLFTKMLHSVLRAPMSFFDSTPAGRILNRRYYTPTARELARLAQIQITPILHHFSESLAGAASIRAFDQEGRFIYTNLVLVDGFSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVMLVSLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERIIQYTNIKSEAPLVIEDSRPPSNWPETGTICFKNLQIRYAEHLPSVLKNITCTFPGRKKVGVVGRTGSGKSTLIQAIFRIVEPREGSIIIDNVDICKIGLHDLRSRLSIIPQDPALFEGTVRGNLDPLQQYSDIEVWEALDKCQLGHLVRAKEEKLESPGRIAEYDEPSRLLEREDSFFFKLIKEYSGRSQSLNSLAIQHVQSREQL 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01407 1235 Gene3D - 619 704 IPR027417 -
Vian9g01407 1235 Gene3D ABC transporter type 1, transmembrane domain 708 895 IPR036640 GO:0005524|GO:0016020
Vian9g01407 1235 FunFam ABC transporter C family member 9 1042 1191 - -
Vian9g01407 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 796 894 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g01407 1235 FunFam ABC transporter C family member 10 291 605 - -
Vian9g01407 1235 Gene3D ABC transporter type 1, transmembrane domain 896 1039 IPR036640 GO:0005524|GO:0016020
Vian9g01407 1235 Gene3D ABC transporter type 1, transmembrane domain 279 607 IPR036640 GO:0005524|GO:0016020
Vian9g01407 1235 Pfam ABC transporter 1075 1176 IPR003439 GO:0005524
Vian9g01407 1235 Coils Coil 470 490 - -
Vian9g01407 1235 MobiDBLite consensus disorder prediction 737 770 - -
Vian9g01407 1235 CDD ABC_6TM_ABCC_D1 311 597 IPR044746 GO:0140359
Vian9g01407 1235 SUPERFAMILY ABC transporter transmembrane region 304 605 IPR036640 GO:0005524|GO:0016020
Vian9g01407 1235 Pfam ABC transporter transmembrane region 805 894 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g01407 1235 Pfam ABC transporter transmembrane region 310 572 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g01407 1235 Pfam ABC transporter transmembrane region 895 985 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g01407 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 895 1021 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g01407 1235 Gene3D - 1041 1225 IPR027417 -
Vian9g01407 1235 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 232 678 - -
Vian9g01407 1235 Pfam ABC transporter 642 723 IPR003439 GO:0005524
Vian9g01407 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 589 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g01407 1235 SUPERFAMILY ABC transporter transmembrane region 796 1040 IPR036640 GO:0005524|GO:0016020
Vian9g01407 1235 CDD ABC_6TM_ABCC_D2 794 1033 IPR044726 GO:0140359
Vian9g01407 1235 MobiDBLite consensus disorder prediction 750 770 - -
Vian9g01407 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1049 1185 IPR027417 -
Vian9g01407 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 690 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01407 Vian-Chr9 29740730 29747207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01407 1055 1153 Calmodulin-binding Proteins AT2G36910 33.663 6.85e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01407 - - gmx:100809749 1167.53