Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01396 ATGCCGGTTATGAAGCGATATGTTCTGAGATTGTTCATATCATTGAAGTATATCACTGCAAACGTGGTAGACAGAAGCAATGGTCGAATTGTAGCAACATCATCCACAGCAGAACATACCATTAAAGGGTCACTTGAGTGTGGCAGGTCCTGCAATGCTAAAGCAGCTACTGTTGTTGGAGAGGTATTGGCTAGGCGGCTCAAAGTTGAGGGCCTCAATGAAGGAGAAGGAAGAGGGATTCATGCAAACATAGGTAAAGAAGTAGGGAAGAAAGGATTTAAGAACCAAACCAAGGTTTGGGCTGTTATGAATGCTCTCAAGAACAATGGTGTCAAACTCATCCTCGATGATGAAAACGATGACAAAAATTCTTGGCCTGAAGAGGATGAAGCAGAAGAAGAAATTGCAGAAAGTAATAAAAGATCAGTTTTTGAATTGCAGCGATTGATGAATGGTAAATATACGATGGTGGGGGAATCAAGAAAATGGGTGGTTCTCGGTGCATCAATATGGGTGCAGGCATTCACCGGAACAAACTTTGATTTCTCATCGTACTCTTCAGATTTGAAATCTGTGCTTGAGATAACTCAGCTTCAGCTGAACTATCTCTCTGTGGCCTCAGACATGGGAAAGGCCTTTGGGTGGTGCTCTGGTCTCTCACTTCTCCATTTTCCTTTCTGGGTTGTTCTGTTCATCGCTGCTTTCATGGGACTCTTTGGCTATGGCTTTCAATGGCTTCTCATTCATCGCTTCATCACTTTGCCTTATTCTCTTGTTTTCTTTCTCTGTCTGATTGCTGGCTGCAGCATCTCCTGGTTCAACACCATCTGCTACGTCCTATGCATCAGACATTTTCCTACAAACCGTTCTCTTGCATTATCCTTGAGTGTTAGTTTCAATGGTGTGAGTGCAGCTTTGTACACTCTCATTGCCAATGCAATCAACTCAAACGATGACACTCTCTACCTATTACTCAATGCAATACTTCCAGTCCTGATATCTCTTCTAGTACTCCTCCCAATTCTCCATCAACCAAAGCCTCAACCACATTCTATTGACACCATTAAGCATGATTCATCAATCTTCCTCTGCCTCAACATCCTTGCCCTTGTAACAGGCCTCTACCTCATCTTCCTATATTCCTTCTCTTACACACTTGCCACTGCTCGTGTAATCCTTGTAGGTGCCATTTTTCTCCTTGTGCTGCTCATTTTTGTTCCTTCTCTTGTCTATTCTATGAAATCGTCTAGCTTTTCTCTCCCCACGAGTTTTTCCTTCTTCTACTCAATACTCACTCGCGTTGACCCAGATGATAAAGAGCTTTACCAAGAGCTCATTACCATCGAAGACAGCGCGGAGAGTAAAAGTGCACAAAGCACAAGAGAGAAGAAAAGTCTCTTGGAGAGAGAGCAGCTTACTATGCTGGGGGAAGAGCATTCAATTAAGTTGCTAGTGCGTAGATGGGACTTCTGGTTGTACTACATAGCATATTTCTGTGGAGGAACAATTGGTTTGGCTTACAGCAACAACTTGGGGCAAATTTCCCAATCACTAGGACACTATTCTCACATTTCTTCTCTTGTCACACTCTACTCCACATGTTCCTTCTTTGGTCGCCTTCTTGCCGCCGCACCTGACTTCTTAAACAGGAGAATGCACTTTGCAAGAACAGGGTGGTTTGCAGCAGCCTTGGTGCCAACACCAATTGCATTCATTTTGTTGGCCATATCTGGTAGTGGAGCAGCATTGCACATAGGCACAGCCTTGATAGGGTTGAGTTCAGGCTTTGTGTTTTCTGCAGCAGTGTCTATTACCTCAGAGCTATTTGGTCCAAACAACGTTGGAGTGAACCACAACATCCTCATCACCAACATTCCTTTAGGTTCATGTCTCTATGGCCTTCTTGCAGCTTTGGTTTATGATTCCAATGCAATTAACTCAACCCATGAAATTTGGCTGCAAGAAATGTCCATGTGCATCGGGAGAAACTGCTACCTGCAAACATTCATTTGGTGGAGTTGCATTTCAATGGTGGGCTTGGTTTCAAGTTTCTTCTTCTTCTTAAGGACTAAACAAGCTTATGACAATTTTGAAAAGAATGATAACAGCAACAACATAGCTACATGA 2127 0.4311 MPVMKRYVLRLFISLKYITANVVDRSNGRIVATSSTAEHTIKGSLECGRSCNAKAATVVGEVLARRLKVEGLNEGEGRGIHANIGKEVGKKGFKNQTKVWAVMNALKNNGVKLILDDENDDKNSWPEEDEAEEEIAESNKRSVFELQRLMNGKYTMVGESRKWVVLGASIWVQAFTGTNFDFSSYSSDLKSVLEITQLQLNYLSVASDMGKAFGWCSGLSLLHFPFWVVLFIAAFMGLFGYGFQWLLIHRFITLPYSLVFFLCLIAGCSISWFNTICYVLCIRHFPTNRSLALSLSVSFNGVSAALYTLIANAINSNDDTLYLLLNAILPVLISLLVLLPILHQPKPQPHSIDTIKHDSSIFLCLNILALVTGLYLIFLYSFSYTLATARVILVGAIFLLVLLIFVPSLVYSMKSSSFSLPTSFSFFYSILTRVDPDDKELYQELITIEDSAESKSAQSTREKKSLLEREQLTMLGEEHSIKLLVRRWDFWLYYIAYFCGGTIGLAYSNNLGQISQSLGHYSHISSLVTLYSTCSFFGRLLAAAPDFLNRRMHFARTGWFAAALVPTPIAFILLAISGSGAALHIGTALIGLSSGFVFSAAVSITSELFGPNNVGVNHNILITNIPLGSCLYGLLAALVYDSNAINSTHEIWLQEMSMCIGRNCYLQTFIWWSCISMVGLVSSFFFFLRTKQAYDNFEKNDNSNNIAT 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01396 708 FunFam 50S ribosomal protein L18-like 1 113 - -
Vian9g01396 708 Gene3D MFS general substrate transporter like domains 424 683 IPR036259 -
Vian9g01396 708 Pfam Nodulin-like 162 407 IPR010658 -
Vian9g01396 708 SUPERFAMILY MFS general substrate transporter 129 349 IPR036259 -
Vian9g01396 708 Gene3D - 2 113 - -
Vian9g01396 708 SUPERFAMILY MFS general substrate transporter 368 692 IPR036259 -
Vian9g01396 708 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 163 695 - -
Vian9g01396 708 CDD Ribosomal_L18_L5e 4 111 - -
Vian9g01396 708 SUPERFAMILY Translational machinery components 5 111 - -
Vian9g01396 708 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 5 73 IPR005484 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01396 Vian-Chr9 29584247 29592115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01396 155 703 Nodulin-like Gene Family AT1G31470 54.348 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01396 - - gmx:100804951 927.932
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g01396 9 29584247 29592115 Vian9g01396 9 29584247 29592115 ECH