Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01384 ATGATGGCTCCAGGCACGTACTTCAACTGGGACACTGTTCAAATTCCCAGTTCAGAAACAAACACCTTCCACATGCTGGAAGAAGTAGCAACACCAAACCTGCAACACCTTTTCTCCTACTACGATCAAAAACTTTTTCTTCCAACCGGTTCTTTTGAGAACTACATTGACCCAACTGGTGGTTTTCTTCACCCTTCAGATATTGACACTTCTCTCTATGATCCTTCCAGTTCCTTTGCTCATCCTAACATCTTTCCAACTTCTCAACAAGTTACCCTAGTTGAATCAAAAGTTTGCTTAAGTTTTCTCAAAACTCAACTTTTTCATTTGCAGAGGTTCATTTTCATGATGGCTCCCTTCCACATGCTGGAAGAAGTACCAACACCAAACCTGCAACACCTTTTCTCCTACTACATTGACCCAACTGGTGGTTCTCTTTACCCTTCAGATATTGACACTTCTCTCTATGATCCTTCCATTTCCCTTGCTCATTCTATCATCTTTCCAACTTTTCAACAAGATAATCTACTCCCATCTCCCAAACGCCAAAAGTGCTGCTGTGAGAGTGAAGTGCAAAAACTTACTACACAAACTGCCCTGCCATCCAGTTACACAGATGAATTTGTTGTGCCTTATGATAATTTCTACTCTTCACACATTGAGGAACTCCCACAACAAATATCAGTTGGGTTTGCACAATTTCATAGTACCTGTGAGGATCTTAAGTGTGTGAAAAAAGAAACGGAGAAAACAATATCTCCCCAAAGCTTAGCAGCACGAGAGAGGAGAAGAAAGATCAGTGAGAAGACGCAGGAACTTGGAAAATTGGTTCCTGGTGGACCAAAGATGAACACAGCTGAAATGCTTCATGCAGCTGCAAAGTATGTTAAGTACCTTCAAGCCCAAGTTAATTTGCTTGAACTCACAAAATCACTGGAAGATAACGCAGAAACTCCTTCTGGAATGCTGCACTCACTAGTTGTTTCCTCCTTTGTTCAAGAGAAGTTATATAGAGAGGAAATGTGTTTTGTGGCAAAAGAAACTGTGATAACTATGACAAATCATGAAGATGTTCAATCAAGACCTACCATACTTAGGGATCTTAAACAGCTCATTCGGACAAACATTGCTAACAAAGAAAAGAAAGAATAA 1152 0.4028 MMAPGTYFNWDTVQIPSSETNTFHMLEEVATPNLQHLFSYYDQKLFLPTGSFENYIDPTGGFLHPSDIDTSLYDPSSSFAHPNIFPTSQQVTLVESKVCLSFLKTQLFHLQRFIFMMAPFHMLEEVPTPNLQHLFSYYIDPTGGSLYPSDIDTSLYDPSISLAHSIIFPTFQQDNLLPSPKRQKCCCESEVQKLTTQTALPSSYTDEFVVPYDNFYSSHIEELPQQISVGFAQFHSTCEDLKCVKKETEKTISPQSLAARERRRKISEKTQELGKLVPGGPKMNTAEMLHAAAKYVKYLQAQVNLLELTKSLEDNAETPSGMLHSLVVSSFVQEKLYREEMCFVAKETVITMTNHEDVQSRPTILRDLKQLIRTNIANKEKKE 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01384 383 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 245 347 IPR045843 GO:0003700|GO:0006355
Vian9g01384 383 SMART finulus 256 305 IPR011598 GO:0046983
Vian9g01384 383 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 250 299 IPR011598 GO:0046983
Vian9g01384 383 Gene3D - 249 319 IPR036638 GO:0046983
Vian9g01384 383 Pfam Helix-loop-helix DNA-binding domain 260 300 IPR011598 GO:0046983
Vian9g01384 383 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 251 309 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01384 Vian-Chr9 29385644 29394683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01384 249 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 47.727 1.17e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian9g01384 HLH 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01384 - - vum:124847968 514.998