Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian9g01342 | ATGAAGTTCAACATTGCCAATCCTACCACTGGCTGCCAGAAGAAACTCGAGATCGATGACGATCAGAAGCTGAGAGCATTTTGGGACAAGAGAATTTCACAGGAGGTCAGTGGAGATGCTCTGGGTGAGGAGTTTAAAGGATATGTGTTCAAAATCACTGGTGGTTGTGACAAACAAGGATTCCCAATGAAGCAAGGAGTGCTGACACCTGGTCGAGTTCGTCTTTTGCTCCACAGAGGAACACCTTGCTTCCGTGGGTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGATCTTTCTGTTCTGAACTTGGTAATTGTGAAAAAGGGAGAAAGTGATTTACCAGGTCTGACTGATGTTGAAAAGCCAAGAATGAGAGGTCCAAAGAGAGCATCAAAGATTCGTAAGCTGTTCAACCTGTCTAAAGAAGATGATGTCAGGAAGTATGTCAATACATACCGTCGAACCTTCACAACAAAGGCTGGGAAAAAGGTGAGCAAAGCTCCAAAGATTCAACGACTTGTCACTCCATTGACCCTGCAAAGGAAGAGGGCAAGAATTGCTGATAAGAAGAAGAGAATTGCAAAGGCAAAATCAGAGGCAGCTGAGTATCAGAAACTTCTTGCCTCCAGATTGAAGGAGCAGAGGGAACGCCGCAGTGAGAGTTTGGCAAAGAGGAGGTCCAAGATTTCCAGTGTTTCTAAGCAGCCTGCCGCTGCATAG | 750 | 0.464 | MKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKISSVSKQPAAA | 249 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian9g01342 | 249 | Coils | Coil | 189 | 216 | - | - | |
| Vian9g01342 | 249 | Gene3D | - | 133 | 234 | - | - | |
| Vian9g01342 | 249 | Pfam | Ribosomal protein S6e | 1 | 128 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Vian9g01342 | 249 | MobiDBLite | consensus disorder prediction | 219 | 237 | - | - | |
| Vian9g01342 | 249 | PANTHER | 40S RIBOSOMAL PROTEIN S6 | 1 | 239 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Vian9g01342 | 249 | ProSitePatterns | Ribosomal protein S6e signature. | 52 | 63 | IPR018282 | GO:0003735|GO:0005840|GO:0006412 | |
| Vian9g01342 | 249 | SMART | Ribosomal_S6e_2 | 1 | 128 | IPR001377 | GO:0003735|GO:0005840|GO:0006412 | |
| Vian9g01342 | 249 | PIRSF | RPS6e | 1 | 249 | IPR014401 | GO:0003735|GO:0005840|GO:0006412 | |
| Vian9g01342 | 249 | MobiDBLite | consensus disorder prediction | 219 | 249 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian9g01342 | Vian-Chr9 | 28643157 | 28646804 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian9g01342 | 1 | 249 | Cytoplasmic Ribosomal Protein Gene Family | AT5G10360 | 71.888 | 1.20e-121 | 343 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian9g01342 | K02991 | - | gmx:100800507 | 436.032 |