Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01341 ATGGTTTCACCTATATTTGCCTTTCTTCTTTGCTCAATGGTGCTGCTAAACATTTTTGTTGTAGCCCAAACCAGAAGCAGTAAAATCATTGATCAGTATCTTCTGAAAGAAACCATCAAAGCCTCATGGGTAGTTTCATCTTCTGGTGAGATAAACCAAACCACAAGAAACATGACTGTTGGTGATTCACATTTTGCAGAAACAACTAGCAGCAACTCCTCAACGTGGGTGGTTTCACGTCTTGGCCACTTTGCCTTTGGGTTTCTTCCACTTGAGGACACTAACCATTTCTTACTTTCCATTTGGTATGCTAAGATTCCTGGCAAGACTGTTGTTTGGTATGCCAATGGAGACACTCCTGCTCCAAAGGGGTCAAAGGTTGAACTCACTGGTGATGATGGGTTAGTCCTCACTGCCCCAAATGGTGAACTGTTATGGAAAACTAAGACCCTTACTGGTAAAGTTCATCAAGGGTTTTTAAAGGACAACGGAAACTTTGTGCTTGTGGATGAAAATCATCACGGTGTGTGGGAGACGTTTAAGCATCCAAGGGACACCTTGTTGCCCACACAAACTCTTGAAAAAGGTGAGAAGCTTTCATCAAGATTTGTAGAGTCAAATTACTCAGAAGGAAGGTTTGAGATGATGCTCCAAATGGATGGTATTCTTTCCATTCATGCTTTAAACTCGCCATCTGGGTATGCCAATGAAAACTACTACGAAAGTAGGACTGAAGAGTCCAACACATCAAGTCCTGGAATTCGTTTGGTGTTTGAACCATCAGGGTATGTGTATGTTTTGAGGAAGAACAGTGAGAAATACAACTTGTCAACATGGAGTGGAGCCTCTACTACTAATGAATCTTACTTTAGAGCAACTCTTAATTTTGATGGGGTGTTTACACTCTATCAACATTCTCAGAGTTCGTTTGGGAGTGATGGTTGGAGTGCTGTTTGGTCTCAGCCAGATAACATCTGTCTCAGCAGGCTTGCCACTGAAGGTAGTGGTGTTTGCGGGTTCAATAGTGTGTGTACGTTGGGAAGTAATCAAAGGCCAAGTTGTCAATGCCCAAAATGGTACTCTTTGGTTGACCCTAATGACCCGTATGGTAGCTGCAAGCCAGATTTCATACAAGGATGTGCAGAAGATGAACTCATTGGAAAAGTAGGTGTAGCTGGATATGATTTTGAGGTGTTGGTAAATACAGATTGGCCTCTTTCAGATTATGTGCTTCTTAAGCCCTTTACTGAAGAACAATGTGAACAGTCATGTTTGGAAGATTGTATGTGTGCAGTTGCCATCTACAAGTCAGGAAGTGATTGCTTCAAGAAGAAGTTGCCTCTTTCAAATGGTAGAGTTGATGTTGGACTTAATGGTGCAAAGACTTTCATCAAAGTGAGGAAAGATAATTCCTCTTTGGTTGTTCCACAAGCCAAAGTGAATGAGAATAGTAAGAGCTCTTTGAGTTTGGTTGCTTGGGTACTTTTTGGAAGCTCTTCATTTCTCAATGTCATATTTATTGGTGCCTTATGCATGTGCTTTTTCTACATCTTTCAGTACAAAAAGAAGCTTAGAGGAATTGGCAAAAGTGCCAATGCCCTTGAAACTAACTTGCGTTGCTTCTGTTATGAGGAGCTTGAAAGAGCTACAAATGGTTTCCAGAAAGAGTTAGGAAGAGGGTCTTTTGGTGTTGTCTATGAAGGAGTCATAAACATAGGCTCAGAAATTCCAATAGCAGTGAAAAAGCTAAACACTTTGCTTTTCCAACAGGTTGAGATGGAGTTCAAGAACGAGTTACATGCCATTGGTCTCACTCATCACAAGAACTTGGTGCGGTTGATAGGCTATTGTGAGGCTGAAAAAGAAAGATTGTTGGTTTATGAGTATATGAGCAATGGCACTTTGGCAAGTCTTATTTTCAGTGAGGTGAAACCTGAGTGGAAACTGAGGTTAGAGATTGCATCTGGGGTAGCTAGAGGACTTGCATATTTGCATGAAGAGTGCATCACTCAGATTATCCACTGTGACATAAAGCCACAAAACATACTCATTGATGAGTACTATAATGCCAGAATTTCTGACTTTGGATTGGCCAAGCTCTTGAAGATGAACCAAAGCAGAACCAACACTGCCATAAGGGGAACAAAGGGGTATGTGGCACTTGAATGGTTTAAAAACATGCCTATCACAGCTAAAGTGGATGTCTATAGTTATGGTGTGTTGTTGCTTGAGATCATTTGCTGCAGAAGAAATGTAGAAATGGATCTAGAAGAGGAAGAGAAGGTTATACTAATTGATTGGGCTTGTGATTGCTATTCAAGAGGTACTTTTGATCCCTTGGTTGAAGATGACAAGGAGGCATTCGATGACAAAAAGAACATGATGAAGTTGGTGATGATTTCCATTTGGTGCATTCAAGAGGATCCAATTCTTAGACCAACCATGAGAAAAGTGACACAGATGCTTGAAGGTGTTGTAGAAGTCGAACCTCCACCATTCCCCTCACAATTTAGTAGACATTCTCAAAATCCATGA 2535 0.4099 MVSPIFAFLLCSMVLLNIFVVAQTRSSKIIDQYLLKETIKASWVVSSSGEINQTTRNMTVGDSHFAETTSSNSSTWVVSRLGHFAFGFLPLEDTNHFLLSIWYAKIPGKTVVWYANGDTPAPKGSKVELTGDDGLVLTAPNGELLWKTKTLTGKVHQGFLKDNGNFVLVDENHHGVWETFKHPRDTLLPTQTLEKGEKLSSRFVESNYSEGRFEMMLQMDGILSIHALNSPSGYANENYYESRTEESNTSSPGIRLVFEPSGYVYVLRKNSEKYNLSTWSGASTTNESYFRATLNFDGVFTLYQHSQSSFGSDGWSAVWSQPDNICLSRLATEGSGVCGFNSVCTLGSNQRPSCQCPKWYSLVDPNDPYGSCKPDFIQGCAEDELIGKVGVAGYDFEVLVNTDWPLSDYVLLKPFTEEQCEQSCLEDCMCAVAIYKSGSDCFKKKLPLSNGRVDVGLNGAKTFIKVRKDNSSLVVPQAKVNENSKSSLSLVAWVLFGSSSFLNVIFIGALCMCFFYIFQYKKKLRGIGKSANALETNLRCFCYEELERATNGFQKELGRGSFGVVYEGVINIGSEIPIAVKKLNTLLFQQVEMEFKNELHAIGLTHHKNLVRLIGYCEAEKERLLVYEYMSNGTLASLIFSEVKPEWKLRLEIASGVARGLAYLHEECITQIIHCDIKPQNILIDEYYNARISDFGLAKLLKMNQSRTNTAIRGTKGYVALEWFKNMPITAKVDVYSYGVLLLEIICCRRNVEMDLEEEEKVILIDWACDCYSRGTFDPLVEDDKEAFDDKKNMMKLVMISIWCIQEDPILRPTMRKVTQMLEGVVEVEPPPFPSQFSRHSQNP 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01341 844 ProSiteProfiles Bulb-type lectin domain profile. 61 181 IPR001480 -
Vian9g01341 844 Pfam D-mannose binding lectin 110 195 IPR001480 -
Vian9g01341 844 ProSiteProfiles Protein kinase domain profile. 551 826 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01341 844 Gene3D Transferase(Phosphotransferase) domain 1 630 832 - -
Vian9g01341 844 SMART blect_4 67 183 IPR001480 -
Vian9g01341 844 SUPERFAMILY Protein kinase-like (PK-like) 538 837 IPR011009 -
Vian9g01341 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 97 232 IPR036426 -
Vian9g01341 844 Gene3D Phosphorylase Kinase; domain 1 527 629 - -
Vian9g01341 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 672 684 IPR008271 GO:0004672|GO:0006468
Vian9g01341 844 PIRSF SRK 31 844 IPR024171 GO:0004674
Vian9g01341 844 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 68 833 - -
Vian9g01341 844 Gene3D - 59 182 IPR036426 -
Vian9g01341 844 CDD B_lectin 69 183 IPR001480 -
Vian9g01341 844 Pfam Protein kinase domain 554 820 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01341 844 SMART serkin_6 551 822 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01341 844 Gene3D - 184 324 IPR036426 -
Vian9g01341 844 FunFam S-receptor-like serine/threonine-protein kinase 521 629 - -
Vian9g01341 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 630 830 - -
Vian9g01341 844 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 52 181 - -
Vian9g01341 844 ProSitePatterns Protein kinases ATP-binding region signature. 557 582 IPR017441 GO:0005524
Vian9g01341 844 FunFam Serine/threonine-protein kinase 184 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01341 Vian-Chr9 28632489 28635023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01341 537 834 Receptor kinase-like Gene Family AT1G60800 37.855 8.58e-68 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vian9g01341 Pkinase 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01341 - - vra:106773297 1642.86