Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01340 ATGGCTTCCCCTTTGCTTCCCTTGCTCTTCCTCTCAATGATTCTGTTACCCTTTCAACTCATCAGTGTTGTAGCCCAAACCAAAACCAACTTAGTTATTGGTGATTCTCATACTGCAGGAAAAGACTCAGCCCCATGGTTGGTTTCATCACCTTCTGGTGACTTTTCCTTTGGTTTCCTCCCACTTGAGGACTCTACTGATCATTTCATACTTTGCATTTGGTATGCAAAGATTCAAACCAACACCATAGTTTGGTTTGCTAATAGGGACAAGCCTGCACCAAAGGACACAAAAGTGGAGCTTACAGCTAATGATGGGTTGGTGCTCACTGCCCCAAATGGTGACCGGTTATGGAATACTGTTACCAGTTCTAGAGTTTCTGGGGGTTCGTTTAATGACACTGGCAACTTAGTGCTTCAGGATGGTGACTCCAACAGTGCATGGGAGAGTTTCAAGGATTATAGGAACACCTTGCTGCCCTATCAGACTCTGGAAAGGGGTCAAAAGCTTTCTTCTATGCTTAGGGAGAATGATTTCAACAGGGGCAGGTTTGAGCTATTTTTCCAAAATGATGGTAATCTTGTGATGCACTCTATAAATTTACCATCTGGGTATTCTAATGAAAAGTACTATGAAAGTGGAACCGTCGAGTCCAACACTTCTGGTGCTGGGACACAATTGGTGTTTGATAGCTCAGGAGATATGTATATTTTGAGAGCGAACAATGGAAGGTATAATTTGTCAGAAGATGGTGCTGGGGTTTCTATCACTCAATTTTACCTTAGAGCAATTCTTGATTTTGATGGGGTGTTCACGCTCTATCGACATCCTAAGGGTTCTTCTGGCAGTGGAGGCTGGACCCCAGTGTGGTCTCATCCAGATAATATCTGTAAGAACTATCTTGCTGATGCAAGTAGTGGTGTTTGTGGATATAATAGCATATGCAGTTTAAGAGATGATAAGAAACCAACTTGTCAGTGTCCAAAATGGTACTCATTGACTGACCCTAAGGATCCCTACGGTAACTGCAAACCAGATTTTGTACAAGAATGTTTTGAAGATGATCTTAGTAACAGAAAGAATCAATATGATTTTGAGGTGTTGACAGATACTGATTGGCCTCGTTCAGATTATGAGCTTCAAAAACCCTTTAGTGAAGACCAATGCAAACAATCTTGTATGGAAGATTGTATGTGTTCTGTTGCCATTTTCAGGCTAGGTGACAGCTGCTGGAAGAAGAAGCTGCCACTTTCAAATGGTAGAGTTGATCCCACGCTTAATGGTGGAAAGGTCTTCATGAAAGTGAGGAAGGACAATTTCTCCTTGATTAGTCCTCCAACAATCATTGTGAAGAACAATAGGAATACTTTGACTTTGATTTTGTCAGTGCTTTTGGGCAGTTCTGCTTTGCTCAATCTCATATTGGTCTTTGCAATCTGCTTGAGCACTTCCTACGTTTTCCAGTACAAGAAGAGGCTTAGAAGAGCTGGAAAAACTGACACTACTGTGGAGACCAACTTGCGTTGCTTCACTTATGAGGAACTTGAAGAAGCCACTGATGGCTTTGACAAAGTGCTAGGGAAGGGAGCTTTTGGCGTTGTGTATGAAGGAGTCGTCAACATAGGTTCTGTTACTCGTGTGGCTGTGAAACGATTGAACACTTTTCTCTTGGAAGAGGTTCAGAAGGAATTCAAGAATGAACTGAATGTCATTGGCCTCACACACCACAAGAACTTGGTTCGTATACTTGGATTTTGTGAGACTGAATCAGAAAGGATACTTGTTTATGAGTATATGAGCAATGGCACTTTAGCAAGTCTTCTTTTTAATGTCGAGAAACCAAGTTGGAAACTGAGGCTACAAATTGCATCTGGGGTTGCTAGAGGACTTCTATATTTGCATGAAGAGTGCATCACACAGATCATCCATTGTGACATAAAGCCTCAGAACATACTCCTTGATGATTACTATGTTGCAAGAATTTCAGACTTTGGATTGGCCAAGCTTTTGAACATGAACCAGAGCAGAACCAACACTGCAATAAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTCAAAAACATGCCAATCACGGCTAAAGTGGATGTCTATAGTTATGGGGTGCTGTTGCTTGAGATAGTTTCATGCAGAAAAAGTGTGGAATTTGAGTTAGAAGATGAATCCAAAGCAATCCTAAGTGAATGGGCTTATGAGTGCTACTCTGAAGGTGCTCTTCATCCCTTGGTTGAGGGTGATAAAGAGGCATTGGATGACATGAAGACAGTGGAGAAGTTGGTGATGATTGCCCTTTGGTGTGTGCAAGAGGATCCTGGTTTTAGACCAACCATGAGAAATGTTACACAGATGCTTGAAGGTGTTGTTGAAGTGCAAGTTCCACCATGCCCCTCACAAGTTAGTGTTCAATATTCCCTAAACTAA 2442 0.4185 MASPLLPLLFLSMILLPFQLISVVAQTKTNLVIGDSHTAGKDSAPWLVSSPSGDFSFGFLPLEDSTDHFILCIWYAKIQTNTIVWFANRDKPAPKDTKVELTANDGLVLTAPNGDRLWNTVTSSRVSGGSFNDTGNLVLQDGDSNSAWESFKDYRNTLLPYQTLERGQKLSSMLRENDFNRGRFELFFQNDGNLVMHSINLPSGYSNEKYYESGTVESNTSGAGTQLVFDSSGDMYILRANNGRYNLSEDGAGVSITQFYLRAILDFDGVFTLYRHPKGSSGSGGWTPVWSHPDNICKNYLADASSGVCGYNSICSLRDDKKPTCQCPKWYSLTDPKDPYGNCKPDFVQECFEDDLSNRKNQYDFEVLTDTDWPRSDYELQKPFSEDQCKQSCMEDCMCSVAIFRLGDSCWKKKLPLSNGRVDPTLNGGKVFMKVRKDNFSLISPPTIIVKNNRNTLTLILSVLLGSSALLNLILVFAICLSTSYVFQYKKRLRRAGKTDTTVETNLRCFTYEELEEATDGFDKVLGKGAFGVVYEGVVNIGSVTRVAVKRLNTFLLEEVQKEFKNELNVIGLTHHKNLVRILGFCETESERILVYEYMSNGTLASLLFNVEKPSWKLRLQIASGVARGLLYLHEECITQIIHCDIKPQNILLDDYYVARISDFGLAKLLNMNQSRTNTAIRGTKGYVALEWFKNMPITAKVDVYSYGVLLLEIVSCRKSVEFELEDESKAILSEWAYECYSEGALHPLVEGDKEALDDMKTVEKLVMIALWCVQEDPGFRPTMRNVTQMLEGVVEVQVPPCPSQVSVQYSLN 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01340 813 SUPERFAMILY Protein kinase-like (PK-like) 502 792 IPR011009 -
Vian9g01340 813 SMART serkin_6 520 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01340 813 Gene3D - 154 281 IPR036426 -
Vian9g01340 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 599 799 - -
Vian9g01340 813 PIRSF SRK 1 812 IPR024171 GO:0004674
Vian9g01340 813 Pfam D-mannose binding lectin 82 167 IPR001480 -
Vian9g01340 813 ProSitePatterns Protein kinases ATP-binding region signature. 526 550 IPR017441 GO:0005524
Vian9g01340 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 156 274 IPR036426 -
Vian9g01340 813 FunFam Serine/threonine-protein kinase 155 300 - -
Vian9g01340 813 Pfam Protein tyrosine and serine/threonine kinase 522 791 IPR001245 GO:0004672|GO:0006468
Vian9g01340 813 SMART blect_4 36 155 IPR001480 -
Vian9g01340 813 ProSiteProfiles Protein kinase domain profile. 520 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01340 813 CDD PAN_AP_plant 357 435 - -
Vian9g01340 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 215 IPR036426 -
Vian9g01340 813 FunFam S-receptor-like serine/threonine-protein kinase 489 598 - -
Vian9g01340 813 Gene3D Phosphorylase Kinase; domain 1 494 598 - -
Vian9g01340 813 Gene3D - 24 152 IPR036426 -
Vian9g01340 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672|GO:0006468
Vian9g01340 813 CDD B_lectin 47 151 IPR001480 -
Vian9g01340 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 25 152 - -
Vian9g01340 813 ProSiteProfiles Bulb-type lectin domain profile. 22 152 IPR001480 -
Vian9g01340 813 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 38 803 - -
Vian9g01340 813 Gene3D Transferase(Phosphotransferase) domain 1 599 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01340 Vian-Chr9 28625379 28627820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01340 506 803 Receptor kinase-like Gene Family AT1G60800 40.694 6.33e-70 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vian9g01340 PK_Tyr_Ser-Thr 6.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01340 - - vra:106773297 1572.37