Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01336 ATGGAGTTTGCATCTTCTTCTTTATCATCGTCATCTTCATCCTTCTTAACATCAGAACCCCATTTCATACACGATGTGTTCATCAACTTTGGTGGAGAAGAAATCGGTAGAAGATTTGTTTCTCATCTCCAATCTGTCCTTTTACAAGCTCAAGTCAAAACTTTGATTAGCGTGGAGAATCTGCAAGAAGGAATGAAGCTGGAAGAGCAGCTTCGAGCAATAGGAGGCACTAAGATTACAATAATTGTTTTCTCCAAATCTTACGCTGAAACTACCCGCTGTCTTCTTGAGCTTGAAAAAATCATTGAATGCCACGAAACATTTGGCCAAATAGTTCTGCCCGTATTTTACGAGATTGGCCCATCGGATGTACGATATCAGATGTATGATTTTGGAAAAACGTTGGAAGAAACTGCACACAGAAGCTATTCAGGAGAACAACGAAAATATGCGTTGTCCAAGTGGAACCGTGCACTCACCACAGCTGCAGTTATGACTGGTTGGGATGTCAGAAATTTCAGGCATGATGCTGAACTTGTAGACGTAATTGTTAACCGAGTTAAGACATTACTGGACTATAAAGACTTGTTTATTACCGAATATCCTGTTGGATTAGAGTCCCGCGTGGAAGACGTGATTAAATGTATTGAAAATCAATCCACCAAAGTGTGTATGATAGGAATATGGGGAATTGGAGGTTCAGGTAAAACAACCATAGCCAAAGCCATCTACAATCGAATTTATCGTGAATTCATTGGTAAGAGTTTCATTGAGAATATTAGTTCTGAAGGGTATTTAGCTATGCAAGAAAATCTTCTTTCTGACGTCCTAAAATCCAAGTTGGAGGTGAAAAGCGTTGGGATGGGAAGAACTATGATCGAGAATAGATTTTCTCGAAAAAAGTTGCTCATTGTGCTTGATGACGTGAATCACATTGGCCAATTAGAAAACCTATGCGGGAGTCGTGAATGGTTCGGTCAAGGAACTGTGATAATCATTACTACTAGAGATTTTCACTTGCTGAACCAACTCAGAGTTAATTATGTATATGAAATGGATCTTTTGAACGGAAATGAGTCACTTGAGCTTTTTAGTTGGCATGTCTTTAGAGATGCAATACCAAAAAAAGAATGGAATGAACTCGCAAGAAACGTCGTTGTTTATTGTGGAGGACTACCGCTAGCTCTTCAGTTCCTTGGTTCCTGTTTATGTGATAGGACAATAGAAGTGTGGGAAATTTTACTGTTGAAACTACAAAGAATTCCCCCGGATGAACTTCTGAGCGTATTAAAAATAAGCTTTGAAGATTTACGTGATACGGAAAAGGATATATTTCTGGATGTATGTTGTTTCTTTATTGGCAAAGAAAGAGAGTATGTGACAGAGATATTAAATGGCTGTGGACTACATGCTGATATTGGAATAACAGTTCTCATAGAGCGTGGCCTCATAAAAGTTGAAAGGAACAACAAATTTCAAATGCATCCTTTGTTACAAGAGATGGCAAGAGAAATTATTCGTCAAGAATGCCCAGAGAAACCGGGGAAAAGGAGTCGATTGTGGTTTCCGGATGACGTAGAAGATGTACTGAAAGAGAATACTGGGACAGAAGCTATATTGTCCCTGAAACTTGATTCCAGCATTAGAGATTGCTTTGAAGCTCATGCTTTCAAGGAAATGCAGAGACTAAGACTGCTACAACTTGATGATGTACAACTTAGTGGAGATTGTGGGCACATTTCTAAAGAACTGAGATGGATTTGTTGGCGAGGGTTTCCATATAAATGCATTCCAAAGAACTTTCATTTGGAAAATGTAATTGCAATTGATTTCAAGTATAGTCTTCTTATTCATCTCGTCTGGCAACGACGCGTGGTTTTAGAGCGGTTAAAATTCCTTAATCTTAGTCACTCCAAATACCTGATAGAAACTCCAGACTTTTCCGGCCTACCAAGTCTTGAACAGCTCATTCTAGAAGATTGTCCAAGTTTGCGCAAGGTACACCAATCCATTGGTGATCTCTCCAATATACTAGTAATAAATTTGAAGGATTGCACAAGTCTAAGATATCTCCCAAGAGAGATATATAAGTTGAGATCTTTAAAAACTCTCATCCTATCTGGTTGTTCGAAGCTTAGGCCATTGGAAAAGATATAA 2157 0.3866 MEFASSSLSSSSSSFLTSEPHFIHDVFINFGGEEIGRRFVSHLQSVLLQAQVKTLISVENLQEGMKLEEQLRAIGGTKITIIVFSKSYAETTRCLLELEKIIECHETFGQIVLPVFYEIGPSDVRYQMYDFGKTLEETAHRSYSGEQRKYALSKWNRALTTAAVMTGWDVRNFRHDAELVDVIVNRVKTLLDYKDLFITEYPVGLESRVEDVIKCIENQSTKVCMIGIWGIGGSGKTTIAKAIYNRIYREFIGKSFIENISSEGYLAMQENLLSDVLKSKLEVKSVGMGRTMIENRFSRKKLLIVLDDVNHIGQLENLCGSREWFGQGTVIIITTRDFHLLNQLRVNYVYEMDLLNGNESLELFSWHVFRDAIPKKEWNELARNVVVYCGGLPLALQFLGSCLCDRTIEVWEILLLKLQRIPPDELLSVLKISFEDLRDTEKDIFLDVCCFFIGKEREYVTEILNGCGLHADIGITVLIERGLIKVERNNKFQMHPLLQEMAREIIRQECPEKPGKRSRLWFPDDVEDVLKENTGTEAILSLKLDSSIRDCFEAHAFKEMQRLRLLQLDDVQLSGDCGHISKELRWICWRGFPYKCIPKNFHLENVIAIDFKYSLLIHLVWQRRVVLERLKFLNLSHSKYLIETPDFSGLPSLEQLILEDCPSLRKVHQSIGDLSNILVINLKDCTSLRYLPREIYKLRSLKTLILSGCSKLRPLEKI 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01336 718 Gene3D - 354 438 IPR042197 -
Vian9g01336 718 SMART till_3 23 165 IPR000157 GO:0007165
Vian9g01336 718 PRINTS Disease resistance protein signature 389 403 - -
Vian9g01336 718 PRINTS Disease resistance protein signature 296 310 - -
Vian9g01336 718 PRINTS Disease resistance protein signature 696 712 - -
Vian9g01336 718 PRINTS Disease resistance protein signature 225 240 - -
Vian9g01336 718 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 715 IPR044974 GO:0006952
Vian9g01336 718 Pfam NB-ARC domain 206 420 IPR002182 GO:0043531
Vian9g01336 718 Gene3D - 196 349 IPR027417 -
Vian9g01336 718 Gene3D - 23 195 IPR035897 -
Vian9g01336 718 Gene3D Ribonuclease Inhibitor 534 718 IPR032675 -
Vian9g01336 718 SUPERFAMILY L domain-like 506 712 - -
Vian9g01336 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 447 IPR027417 -
Vian9g01336 718 Pfam TIR domain 24 188 IPR000157 GO:0007165
Vian9g01336 718 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 168 IPR035897 -
Vian9g01336 718 ProSiteProfiles TIR domain profile. 22 191 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01336 Vian-Chr9 28532471 28535001 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01336 24 718 WRKY Transcription Factor Family AT4G12020 30.249 9.24e-81 280