Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01335 ATGATAGGAATATGGGGAATGGGAGGATCAGGTAAAACAACCATAGCCAAAGCCATCTACAATCGAATTTATCGTGAATTCATTGGTAAGAGTTTTATTGAGAATATTCGTTATGAAGGAGGGTATGTTGCTTTGCAAGAAAATCTTCTTTCTGATGTCCTAAAATCCAAGTTGAAGGTGAAAAGCGTTGAGATGGGAATAATAACTATGATCCAGAATGGATTTTCTCGAAAAAAGTTGCTTATTGTGCTTGATGACGTGAATGAGTCTGCCAAATTAGAAAACCTATGCGGGAGTCGTGAATGGTTCGGTCAAGGAACTGTGATAATCGTTACTACTACAGATTTTCACTTGCTGAAACAACTCAGAGTTAATTATGTTTATAAAATGCATCTTTTGAACGAAAATGAGTCACTCGAGCTTTTTAGTTGGCATGCCTTTAGAGAAGCAAAACCAAGAAAAGAATGGAGTTTACTCGCAAGAAACGTCGTTGATTATTGTGGAGGACTACCACTAGCTCTTCAGTTCCTTGGTTCCTTTTTATGTGATAGGACAATAGAAGTGTGGGAAAGTGTATTGCTGAAACTACAAAGAATTCCCCCGGGTGAAATTCTGAGCGTATTAAAAATAAGTTTTGAAGATTTACGTGATACGGAAAAGGATATATTTCTGGATGTATGTTGTTTCTTTATTGGCAAAGACAGAGACTATGTCACAGAGATATTAAATGCATGTGGACTACATGCTGATATTGGAATAACGGTTTTGATTGAGCGGGGCCTCATAAAAGTTGAAAGGAAAAACAAGCTTCAAATGCACTGTTTGTTACGAGACATGGGAAGAGAAATTATTCATCAAGAATGCTCAAAGGAACCGGGAAAAAGAAGTCGATTGTGGTTGCAGGATGACGTAAAAGATGTACTGAAAGAGAATTCTGGGACAGAAGCTATCCAGGGATTGTACCTGAAACTGCATTCCAGCAGTAGAGATTGCTTGGAAGCTCGTGCTTTCAAGGAAATGAAGAGACTAAGACTGCTACAACTTGATCATGTACAACTTAGTGGAGATTATGGGCACATTTCTAAACAACTGAGATGGATTTGTTGGCGAGGGTTTCCTTACAAATACATTCCAATCAACTTTCATTTGGAAAATGTAATTGCAATTGATTTCAAGCATAGTCGTCTCCAACTAGTCTGGGAACAACGCGTGGACTACCAAGTCTTGAACAGCTGA 1236 0.3835 MIGIWGMGGSGKTTIAKAIYNRIYREFIGKSFIENIRYEGGYVALQENLLSDVLKSKLKVKSVEMGIITMIQNGFSRKKLLIVLDDVNESAKLENLCGSREWFGQGTVIIVTTTDFHLLKQLRVNYVYKMHLLNENESLELFSWHAFREAKPRKEWSLLARNVVDYCGGLPLALQFLGSFLCDRTIEVWESVLLKLQRIPPGEILSVLKISFEDLRDTEKDIFLDVCCFFIGKDRDYVTEILNACGLHADIGITVLIERGLIKVERKNKLQMHCLLRDMGREIIHQECSKEPGKRSRLWLQDDVKDVLKENSGTEAIQGLYLKLHSSSRDCLEARAFKEMKRLRLLQLDHVQLSGDYGHISKQLRWICWRGFPYKYIPINFHLENVIAIDFKHSRLQLVWEQRVDYQVLNS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01335 411 Gene3D - 132 216 IPR042197 -
Vian9g01335 411 PRINTS Disease resistance protein signature 167 181 - -
Vian9g01335 411 PRINTS Disease resistance protein signature 1 16 - -
Vian9g01335 411 PRINTS Disease resistance protein signature 338 354 - -
Vian9g01335 411 PRINTS Disease resistance protein signature 74 88 - -
Vian9g01335 411 SUPERFAMILY "Winged helix" DNA-binding domain 203 309 IPR036390 -
Vian9g01335 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 225 IPR027417 -
Vian9g01335 411 Gene3D - 1 127 IPR027417 -
Vian9g01335 411 Coils Coil 409 411 - -
Vian9g01335 411 Pfam NB-ARC domain 2 199 IPR002182 GO:0043531
Vian9g01335 411 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 398 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01335 Vian-Chr9 28510012 28511568 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01335 2 411 WRKY Transcription Factor Family AT5G45050 32.346 1.11e-69 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01335 - - vra:106774163 663.299