Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01318 ATGGGACCAAACGCTGCGGCGGCGAAACAAGCTGAGCAACTCCGAATTAACGGCAACACTTACTTCAAGAAAGACCGTTTTGGGGCCGCCATCGATGCTTACACCGAGGCGATTACGCTGTGCCCTAATGTTCCGATTTATTGGACGAATCGCGCGCTGTGCCATCTCAAGCGCAATGACTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGCTGGACAGCAATTCAGTCAAGGCCCACTATATGTTGGGGCTAGCATTACTACGGAGACAAGAATCTGCCAAGGGAATTAAAGAATTGGAGAAGGCTTTGGATCTCGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGCAAAATACCATGAGTGGGAGCGATCATCTTCGAAACGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGCGAGTCTGCTCTGAAGGAAAAACATTTTCTGGAATACTCCGAAGCGGAAGGATTTGTAGATGATCCTACTACTTCCCATTCGGAACAATTAGAGGCTTTAGAAGTAGTATTCAATATAGCTGCAGAAGCCGATACACCTACTGAGGTGCCAGATTACTTATGTTGCAGAATCACACTCGACATTTTTCATGATCCTGTAATCACTCCAAGTGGGCTTACATATGAGAGAGCAGTGATTCTTGAACACCTTCAGAAGGTGGGTAAATTCGACCCAATCACGCGGGAACCACTTGATCAATCACAGTTAGTGCCAAACTTGGCCATTAAGGAAGCGGTTCAGGCATTCTTGGACAAGCATGGTTGGGCTTACAAGGTAGACTAA 837 0.4671 MGPNAAAAKQAEQLRINGNTYFKKDRFGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWERVEEDSRKAIQLDSNSVKAHYMLGLALLRRQESAKGIKELEKALDLGRGANPKGYMVEEIWQELAKAKYHEWERSSSKRSWELQSLKEACESALKEKHFLEYSEAEGFVDDPTTSHSEQLEALEVVFNIAAEADTPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGKFDPITREPLDQSQLVPNLAIKEAVQAFLDKHGWAYKVD 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01318 278 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Vian9g01318 278 Pfam Tetratricopeptide repeat 18 43 IPR019734 GO:0005515
Vian9g01318 278 SUPERFAMILY TPR-like 9 129 IPR011990 GO:0005515
Vian9g01318 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 277 IPR013083 -
Vian9g01318 278 ProSiteProfiles U-box domain profile. 200 274 IPR003613 GO:0004842|GO:0016567
Vian9g01318 278 SMART tpr_5 11 44 IPR019734 GO:0005515
Vian9g01318 278 SMART tpr_5 45 78 IPR019734 GO:0005515
Vian9g01318 278 SMART tpr_5 79 112 IPR019734 GO:0005515
Vian9g01318 278 Pfam U-box domain 201 273 IPR003613 GO:0004842|GO:0016567
Vian9g01318 278 Gene3D Tetratricopeptide repeat domain 4 141 IPR011990 GO:0005515
Vian9g01318 278 SMART Ubox_2 204 267 IPR003613 GO:0004842|GO:0016567
Vian9g01318 278 SUPERFAMILY RING/U-box 194 275 - -
Vian9g01318 278 CDD RING-Ubox_CHIP 201 271 IPR045202 -
Vian9g01318 278 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 6 276 IPR045200 GO:0000209|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01318 Vian-Chr9 28194307 28201175 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01318 4 277 U-box Gene Family AT3G07370 68.613 7.45e-141 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01318 K09561 - gmx:100796519 521.161