Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01316 ATGGAGTTCGCTTCTTCTTCATCATCGTCATCATCTTCATCCTTCCTAAAATCAGAACCCCATTTCATATACGATGTATTCATTAACTTTGGGGGAGAAGACATCGGTAGGAAGTTGGTTTCTCATCTCCACTCTGTCCTTTTACAAGCTCAAGTCAAAACTTTGGTTAACGAGGAGAATCTGCAAGAGGGAATGAAGCTGGAAGAACACATGGGAGCAATAGCAGTCTCTAAGATTGCAATAATCGTTTTTTCCAAAACATACACTGAATCCACATGCTGTCTTCTTGAGCTTGAAAAGATTATTGAATGCCTCGAAACTTTTGGCCAAGTAGTTCTGCCCGTATTTTACGAGATTGAACCATTGGATGTACGTGATCAGAAAGATGATTTTGGAAAAGCGTTGGAAGAAACTGCAAAAAAAAGCTATTTAGGAGAACAACTGGAACATGCGTTGTCCAGGTGGAGACGTGCACTCACCACAGCTGCAAGTATGACTAGTTGGGATGTCAGAGATTTCAGGGATGATGCTGAACTTGTGGAGGTAATTGTTAGGCACGTTCAGACATTACTGGACTATAAAGACTTGTTTATTACCGAATTTCCTGTTGGATTAGAGTCCCGCGTGGAAAAGGTTATTGGATGTATTAAAAATCATGACACCAAAGTCTGTATAATAGGGATATGGGGAATGGTAGGAACGGGTAAAACTACCATAGCCAAAGCCATCTACAATCGTATATATCGTCTATTCATTGGTAAGAGTTTTATTGAAACTATTAGAGAGTTTTGGTGTCTATTATATAGAACATATGTTGATTTGCAAGAACATCTTCTTGATGATGTCCTTAAATACAAGTTTGAGTTGGAAAACGACGAGATGGGAAGAACCCTGATCAAGACTAAATTCTCCCGAAAAAAGTTACTCATTGTGCTTGATGATGTGAGTGAGTTTGGCCAACTAGAAAACCTATGCGGGAATCGCGAATGGTTTGGTAGGGGAACTGTGATAATCATTACAACTAGAGATGCTAAAATGCTAAACAGACTGAAAGTTAATTATGTTTATAAAATGGATGATATGAACAAAAATGATTCCCTTGAGCTTTTAAGTTGGCATGCCTTTGGAGAAGCAAAACCAAGAAAAGAATTGAATGAAATTGCAAGGAACATAGTTGCTAATTGTGGAGGACTACCACTAGCCCTTAAGGTCCTCGGTGGATGGACAATGCAAATTCCCTATGTTCAAGTTCAAGAATGGAAATATGTATCGTTACGACTGCCAAATGCCTTTGCTCGAGTTAGAGAGAAATTGAAAATAAGTTTTGACGGTTTAGGTGACATGGAAAAAGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGAGAGAGGCTATGCCACAGAGATACTAAATGGCTGTGGACTACATGCTGATATTGGAATAACAGTTCTCATAGAACGTGACTTCATAAAAGTTGAAAGGAACAACAAACTTGAAATGCATCCTTTGTTACGAGACATGGGAAGAGAAATTACTCGTCGGGATTGGCCACAGGAACCGGGAAAAAGGAGTCGATTATGGTTTCATGAAGATGTAAAAGATATCCTGAAAACAAAGAGTGGAACAAAAGCTACGCAGGGATTGTCCCTGAAACTGCATTCAACCAGCAGAGATTGCTTTGAAGCTCAAGCTTTCAAAAATATGAAGAGTTTAAGATTGCTACAACTGGATCATGTACAACTTACTGGAGACTATGGCTATCTTTCTAAACAACTCAGATGGATTTGTTGGAAAGGGTTTCCTTCTAAATACATTCCAAACAACTTTTGTATGGAAAGTGTGGTTGCAATGGATTTAAAGCATAGTCATCTTCAACTCCTCTGGAAGCAACCACTCTCGAACCAACCCCAGGTTTTAGAGCGGTTAAAATTCCTTAATCTTAGTCACTCCAAGTACTTGAGAGAAACACCTGACTTTTCAATACTACCAAGTCTTGAACAGCTCATTTTAAAAGATTGTCGAAGTTTGTGCAACGTACACCCATCCATTGGAGATCTCTGCAATCTGTTTCTGATAAATTTGAAGGACTGCACAAGTCTAAGTTGTCTCCCAAGAGAAGTATATAAGCTGAAATCCTTAAGAACTTTCATTCTCTCTGGTTGTTTCAAGATTTTCATATTGGAAGAAGATATAGTGCAGTTGGAATCCTTGATAACTCTAGTTACTGAAAATACAGTTGCTGAAAGTACGGCTGTGAAACAATTGCCCTGTTCAATTGTAAGCTCAAAAAGCATTGGATATATATCTCTACGTGGATTTGAAGCATCGTCACATAATATTTTTCCTTCAATCATTCGGTCTTGGATGTCACCAATTGTGAATCCACAATCTTATATTAGCCCGTATTGCATGGATATGAAGAATAATAATGAGCGCGACCTTGCCCCATTGCTCAGCGTCCTTGCAAATATTCGAACTGTTCTTGTTCAATGTGACGCGGAGGTTCAATTATCAAAGCAAGTAAAGAAAATTCTTGTCGAATGCAGTGTAAATTTTACAGAGTCAAGAATTTCAAAGCGTCATTTGAGGTTTTCTTTGAATTGTGTTGGAAGTTACAATGATTTCTTCAACACTCTCAACAATAGCGTTTCTGAGGGATTGGCAAGCAGTGAGTGTAATGATGTTTCTCTTCCAGGTGACAACTATCCTTGGTTGGTCCATATGGGTGAGGGACATTCTGTTTCTTTCACTGTGCCTCAGAATAGTGACATGAAGAGAATGATTCTATGTGTTGTTTATTTATCAACCCCTGGAATCATGGCAACTGAATGTCTTAGAAGTGTCTTAATTGTTAATTACACAAAGTGCAAATTACAGATACACAACCATGGCTCAGTAATTTCCATTAACGATGATGATTGGCATGGCATAATGGCAAATTTAGGATCAGGAGAGAAGGTGGAGATTTTTTTGACTTTTGATCATGGACTGGTCCGTCTGTATGATATGTGGTGA 3021 0.384 MEFASSSSSSSSSSFLKSEPHFIYDVFINFGGEDIGRKLVSHLHSVLLQAQVKTLVNEENLQEGMKLEEHMGAIAVSKIAIIVFSKTYTESTCCLLELEKIIECLETFGQVVLPVFYEIEPLDVRDQKDDFGKALEETAKKSYLGEQLEHALSRWRRALTTAASMTSWDVRDFRDDAELVEVIVRHVQTLLDYKDLFITEFPVGLESRVEKVIGCIKNHDTKVCIIGIWGMVGTGKTTIAKAIYNRIYRLFIGKSFIETIREFWCLLYRTYVDLQEHLLDDVLKYKFELENDEMGRTLIKTKFSRKKLLIVLDDVSEFGQLENLCGNREWFGRGTVIIITTRDAKMLNRLKVNYVYKMDDMNKNDSLELLSWHAFGEAKPRKELNEIARNIVANCGGLPLALKVLGGWTMQIPYVQVQEWKYVSLRLPNAFARVREKLKISFDGLGDMEKDIFLDVCCFFIGKERGYATEILNGCGLHADIGITVLIERDFIKVERNNKLEMHPLLRDMGREITRRDWPQEPGKRSRLWFHEDVKDILKTKSGTKATQGLSLKLHSTSRDCFEAQAFKNMKSLRLLQLDHVQLTGDYGYLSKQLRWICWKGFPSKYIPNNFCMESVVAMDLKHSHLQLLWKQPLSNQPQVLERLKFLNLSHSKYLRETPDFSILPSLEQLILKDCRSLCNVHPSIGDLCNLFLINLKDCTSLSCLPREVYKLKSLRTFILSGCFKIFILEEDIVQLESLITLVTENTVAESTAVKQLPCSIVSSKSIGYISLRGFEASSHNIFPSIIRSWMSPIVNPQSYISPYCMDMKNNNERDLAPLLSVLANIRTVLVQCDAEVQLSKQVKKILVECSVNFTESRISKRHLRFSLNCVGSYNDFFNTLNNSVSEGLASSECNDVSLPGDNYPWLVHMGEGHSVSFTVPQNSDMKRMILCVVYLSTPGIMATECLRSVLIVNYTKCKLQIHNHGSVISINDDDWHGIMANLGSGEKVEIFLTFDHGLVRLYDMW 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01316 1006 PRINTS Disease resistance protein signature 225 240 - -
Vian9g01316 1006 PRINTS Disease resistance protein signature 395 409 - -
Vian9g01316 1006 PRINTS Disease resistance protein signature 302 316 - -
Vian9g01316 1006 PRINTS Disease resistance protein signature 639 655 - -
Vian9g01316 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 455 IPR027417 -
Vian9g01316 1006 SUPERFAMILY L domain-like 518 827 - -
Vian9g01316 1006 Gene3D - 23 196 IPR035897 -
Vian9g01316 1006 Gene3D Ribonuclease Inhibitor 525 786 IPR032675 -
Vian9g01316 1006 ProSiteProfiles TIR domain profile. 22 191 IPR000157 GO:0007165
Vian9g01316 1006 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 193 - -
Vian9g01316 1006 Pfam NB-ARC domain 206 437 IPR002182 GO:0043531
Vian9g01316 1006 Gene3D - 197 356 IPR027417 -
Vian9g01316 1006 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 742 IPR044974 GO:0006952
Vian9g01316 1006 Gene3D - 360 446 IPR042197 -
Vian9g01316 1006 Pfam TIR domain 24 187 IPR000157 GO:0007165
Vian9g01316 1006 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 166 IPR035897 -
Vian9g01316 1006 SMART till_3 23 165 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01316 Vian-Chr9 28170133 28174023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01316 24 782 WRKY Transcription Factor Family AT4G12020 27.353 2.74e-67 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01316 - - pvu:PHAVU_010G027900g 1310.43