LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian9g01314	ATGGAATGTGTGGTTTCTGCAACTGATGCTGCTGATTCTTGTTCTTCTTCGTCCAAATCAAAAACCCATTGGAGATACGATGTGTTTCTGAATTTCAGAGGAGGAGACACTCGCAGCACCTTCGTATCTCATCTCCACAGTGCGCTCTCGAACGCGGGAGTCCACACTTTCATCGATGTGGGACTTCATAAGGGACAGAACCTGGGGCCAGAGCTGCTGCGAGCAATTGAAGGGTCTCAGATAGCAATAGTTGTTTTCTCAAGAAACTACGCGGAATCAAGTTGGTGCCTTGAGGAGTTGGCAAAAATTGCAGAATGTCACAGAACTCATGGGCAAGTGGTTGTGCCAATATTTTACGACGTCGATCCATCGGTTGTGCGCAGACAAACGGGTGATTTTGGAAAAGCGATGGAAGCAGTTGCTGTCAGAACATTCCCTAGTAAGACGTTGCTAGATTCGTTGGTGAGATGGAGTGATGCACTCAACCAGGTTGCAAATTTTACTGGTTGGGATACGAGGCAATGCAGGGATGAAGCAGAACAAGTGAAGAAAATTGTCCAGGGAGTTTTGGCAGCGCTAGACAACACATCATTATCTATTACCCAATTTCCAGTTGGTTTAGAATCCCGTGTGAAAGAAGTGATTATGTTTATTGAAAATCAATCAAGCAAAGCTTGCAAAATAGGGATATGGGGGATGGGAGGATCAGGTAAGACAACCACAGCGAAATCCATCTACAATCAAATTCGTCGTACATATGACTATAGAAGTTTCATCGAAAACATTAGACAAGTTTGTGAACAGGACAGTAAAGGGTATATTCATTTTCAAGAACAGCTTCTTTTAGATATCCTAAAATCAGAAGTTAAGGTACATAGTACGGAAGCAGGGACCACTTTGATTGAGGAAAGACTTCGTGGAAAAAGCACACTCGTTGTACTTGATGATGTGACTAAGTTGGAGCAAGTGCATGCCCTGTGTGGAAATCGTAAATGGATAAGCTCAGGAAGTGTGTTTATTGTTACATCTAGAGACATACGATTACTTCATTTACTTGAAGTTGATTACATTTATACAGTGGAGGAAATGAATGAAAGTGAGTCTCTTGAGCTTTTTAGTTGGCATGCTTTTAGGGAATTAACTCCGACACATGATTTCATTGAACTCTCAAGAAATGTAGTTTCTTATTGTGGAGGACTACCTCTAGCCCTTGAAGTTCTTGGTTCTTACTTGCACAAGAGAACCAAACAGGAGTGGAGAAGTGTGTTATCTAAGCTAAGAATAATTCCCAATGATCAAGTTCAGAAGAAATTGAGAATAAGCTTTGATGGTTTAGAGGATCAGATGGAAAGGGATATATTTCTTGACATTTGTTGTTTCTTTATTGGGAAAGAGAGAGGTTATGTTACGGAGATACTGAATGGCTGTGGACTGCATGCTGATATTGGAATAACAGTTCTTATAGAGCGTAGTCTGGTGAAAGTTGAAGAGAATAATAAACTTGGAATGCATGATTTGGTACGAGACATGGGAAGAGAGATCATTCGTCACAGTTCTCCACAGGATCCTGGGAAGCGCACCCGATTGTGGTTTCAGGAGGATGTACTAGATGTATTGACAAATAATACTGGGACAGAAGCCATTGAGGGATTGGCATTGAAATCGCATGGAACTGGTAGAGATTGCTTTGAAGCAAATGCTTTTAAGGAAATGAAAAGATTGAAACTGTTGAAACTTCACTCTGTACAACTCACTGGATCTTTTGGGCATCTTTCTAAGCAGTTGAGATGGATCTGTTGGCAAGGATTTCCTCTGAAATACATACCTGTAAACTTTTATCAAGGAAGTGTAGTTGCAATAAACTTAAAACACAGTCATCTTAAACTAGTCTGGAAGGAAACTCAGTTGTTGAAGTGGCTAAAAATCCTCAATCTTAGTCATTCCAAAAACTTGACCATCACCCCAGACTTTTCTAAACTACCTAATCTTGAAAAACTCATTCTCAAAGATTGTCCAAGTTTGTGCAAACTGCACCAGTCCATTGGAGATCTCTGCAAACTTCTTCTGCTAAATTTGAAGGACTGTACAAATCTTAGCAGTCTGCCAAGGAGGACCTATAAGTTGAAATCTGTGAAAACTCTAATCCTTTCTGGTTGTTTGAAGATGGACAAATTGGATGAAGACATAGTGCAGATGGAATCCTTGACTACTTTAGTCGCGGAAAATATTGCGGTGAAACAAATTCCCTTTTCGATAGTAAGATCAAAAAGCATTGGATATATATCACTGTGTGGACATAAAGGATTGTCACGTAATGTTTTTCCATCTATCATTTGGTCTTGGATGTCACCAAAAATAAATCCTCTATCTGGTATTTACCCATGTTGGAGCATGTCATCGTCTCTAACCTCCATAGATGTGCAGAGTAACAATTTGGGTGATCTAGCATCAACGCTTACAAGCCTTTCAAAACTTCGTAGTGTTTTGTTGCATTGTGACACGGAGTTTCAGCTGTCTAAAGAATTAAGAACAATTCTGGATGATGTGTATGACGTAAGTTCAATTAAATTAGAAATAAGGTCAAATGAATCGCAGATAACAAACCATTCGTTGAGGCCTTATTTGATTGGAATAGGATGCTACCATGAAGTCTTCAATACTCTCAACAAGAGCATATCAGAGGGATTCACTACCGATGAGTTTTGTGATGTTTTTCTTCCGGGTGACAACTATCCACTTTGGTTGACTCGTACAGGTGAAGGACATTCCGTTCTTTTCAGAGTCCCTGAGGATCGTAATTGTCTCATGACTGGAATGTTTTTGTGTGTTGTTTATTCATCAGCCCTTGAAAAAGTTGCACATGAATGCCTTCTTAGTGTCTTGATAGTTAATTACACAAAGTGCACCATTCAAATATACAAACGAGACACAGTAATTTCTTTCAATGAAGAAGATTGGAACAAAATAATATCACAGCTAGGATTTGGTGACCAAGTGGAGATTTTCGTAACTTTTGGGCATGAATTGATTGTCATGAAGATGGCTATCTATCTATTATATACTGAATCAGCTGACATGCCAATGAATCCTTCTTTGGAACCAAAGGAAAATGCCCTCCTTAGATTCCTAAACAGAATTGTAATGTGTGACTTTTGGTAA	3159	0.3954	MECVVSATDAADSCSSSSKSKTHWRYDVFLNFRGGDTRSTFVSHLHSALSNAGVHTFIDVGLHKGQNLGPELLRAIEGSQIAIVVFSRNYAESSWCLEELAKIAECHRTHGQVVVPIFYDVDPSVVRRQTGDFGKAMEAVAVRTFPSKTLLDSLVRWSDALNQVANFTGWDTRQCRDEAEQVKKIVQGVLAALDNTSLSITQFPVGLESRVKEVIMFIENQSSKACKIGIWGMGGSGKTTTAKSIYNQIRRTYDYRSFIENIRQVCEQDSKGYIHFQEQLLLDILKSEVKVHSTEAGTTLIEERLRGKSTLVVLDDVTKLEQVHALCGNRKWISSGSVFIVTSRDIRLLHLLEVDYIYTVEEMNESESLELFSWHAFRELTPTHDFIELSRNVVSYCGGLPLALEVLGSYLHKRTKQEWRSVLSKLRIIPNDQVQKKLRISFDGLEDQMERDIFLDICCFFIGKERGYVTEILNGCGLHADIGITVLIERSLVKVEENNKLGMHDLVRDMGREIIRHSSPQDPGKRTRLWFQEDVLDVLTNNTGTEAIEGLALKSHGTGRDCFEANAFKEMKRLKLLKLHSVQLTGSFGHLSKQLRWICWQGFPLKYIPVNFYQGSVVAINLKHSHLKLVWKETQLLKWLKILNLSHSKNLTITPDFSKLPNLEKLILKDCPSLCKLHQSIGDLCKLLLLNLKDCTNLSSLPRRTYKLKSVKTLILSGCLKMDKLDEDIVQMESLTTLVAENIAVKQIPFSIVRSKSIGYISLCGHKGLSRNVFPSIIWSWMSPKINPLSGIYPCWSMSSSLTSIDVQSNNLGDLASTLTSLSKLRSVLLHCDTEFQLSKELRTILDDVYDVSSIKLEIRSNESQITNHSLRPYLIGIGCYHEVFNTLNKSISEGFTTDEFCDVFLPGDNYPLWLTRTGEGHSVLFRVPEDRNCLMTGMFLCVVYSSALEKVAHECLLSVLIVNYTKCTIQIYKRDTVISFNEEDWNKIISQLGFGDQVEIFVTFGHELIVMKMAIYLLYTESADMPMNPSLEPKENALLRFLNRIVMCDFW	1052

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian9g01314	1052	Gene3D	-	192	357	IPR027417	-
	Vian9g01314	1052	Gene3D	-	22	191	IPR035897	-
	Vian9g01314	1052	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	26	746	IPR044974	GO:0006952
	Vian9g01314	1052	Pfam	TIR domain	26	200	IPR000157	GO:0007165
	Vian9g01314	1052	ProSiteProfiles	TIR domain profile.	24	193	IPR000157	GO:0007165
	Vian9g01314	1052	Gene3D	Ribonuclease Inhibitor	563	872	IPR032675	-
	Vian9g01314	1052	SMART	till_3	25	167	IPR000157	GO:0007165
	Vian9g01314	1052	Pfam	NB-ARC domain	210	427	IPR002182	GO:0043531
	Vian9g01314	1052	Gene3D	-	362	446	IPR042197	-
	Vian9g01314	1052	SUPERFAMILY	L domain-like	503	832	-	-
	Vian9g01314	1052	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	197	457	IPR027417	-
	Vian9g01314	1052	SUPERFAMILY	Toll/Interleukin receptor TIR domain	15	170	IPR035897	-
	Vian9g01314	1052	FunFam	Disease resistance protein (TIR-NBS-LRR class)	22	195	-	-
	Vian9g01314	1052	PRINTS	Disease resistance protein signature	227	242	-	-
	Vian9g01314	1052	PRINTS	Disease resistance protein signature	397	411	-	-
	Vian9g01314	1052	PRINTS	Disease resistance protein signature	304	318	-	-
	Vian9g01314	1052	PRINTS	Disease resistance protein signature	635	651	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian9g01314	Vian-Chr9	28136066	28140964	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian9g01314	26	752	WRKY Transcription Factor Family	AT4G12020	29.813	3.79e-78	280

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian9g01314	-		-	vra:106773334	1641.32