Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01308 ATGGCATCCTTGTTTTCTCTTTCGTTTTTCTTAAAATTAGTCTCAGGCGAGGTGTTCATCCATTGTTTGGAAGACGACCTCCATGAAAATTTCGTTTCTCATCTGATGTCTGGCCTTTTACAAGCTGGAGTAGAACCTTCTCTGGTTGCCGTGGGAGTGCTGTCAGAGAAATTTATGCCATCAATTACAAGGTTTCAGATTGGAATAGTTGTTTTCACCAAAGCATACATTGAATCTTCTCGGTGTGTTGAAGACCTTCTGAGAATCATTGAATGTCACGAAACATACGGTCTAATGATTATTCCTGTGTTTTACGATACTGACCAATCCTTCCTTGTCCGTGTTTCGGAAGAGAATTTTAGAAATGCGAGGAGAGCACAGAGGAGGGCCGAGGCCCAGGCGAAGATTCGTATCACGGCAGACAGTGGGGAGATTTATGACAAGAGGATGAGACCAAAGGCAAAAACGATGCAAAATTTTTCGCTGAGCCGCGCACTCAACCGGGTTAGAAATTTGCCTACTTGGGATGAGAGCAAACACAGGGATGATGCTGAACTAGTGGAGGAAATTGTTAAGTCTGTTCTCGCTAAACTAGACCGCGCCTTGCCTGTAACTAAATTTCCTGTTGAATTAGAAACCCACGTGAAAAATGTGATTGAATTGTTTGAAAATCAGCCCAACAAAGTCTGTAAGATAGGGATATGGGGAATGGGAGGATCTGGTAAAACTACCTTAGCGAAAGCCATCTACAATAAAATTCCTTTTACATTTGGTGATAAAAGTTTCATTCAAGATATTAGAAAAGTTTGTCAAACAGATGGCAGAAGCGGCCTTGTTCAATTACAAGAGCAACTTCTTTCAGATGTCCTTAAATATGTGAAAATAGAGAGTGGTGAGATGGAAAAAACAACTATCGAGAACCGTCTTTCTGGAAAAAAGTTGTTCATTGTCCTCGATGATGTGAATGATATAGACCAATTAAAACACCTCTGTGGGAACGGTATATGGTTTCTTGCGGGAAGTGTAATAATCATTACCACTAGACATTTAGACCTGCTTTATCAACATAAAGTTGATTATGTTTATGAGATGGATGAACTGAACGAAAATGACTCGGTTGAGCTTTTTAGTTGGCATGCTTTTAGAGAAGCAAAACCAAGAGAAGACTTCATTAAACTTGCAAGATCAACCGTTGCTTATTGTGGTGGACTACCACTCGCTCTTGAAGTCCTTGGTTCTTATTTGAGTAAGAGGTCAGAGAATGAATGGAGAAGTGTATTGTCAAAACTAGAAATAATTCCCAATACTCAAATTCAGAACATCCTAAGAATAAGCTTTGACGGCTTATGTAATGAAATGGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGGAAAGAGAGAGACTATGTCACGGAGATACTAAATGGCTGTGGACTACATGCTGATATTGGAATAAAAGTTCTTATAGAACGTGGACTTGTAAAAATTGAAAATAAGAATAAACTTGCAATGCATCATTTGCTTCGGGACATGGGACGAGAGATTGTGCGCCAAACTTCAACAATGCAACTTGGGAAGCGCAGTAGATTGTGGCTTCCCAAGGATGTACTTGATGTATTGACAAAGAATACTGGGACAGAAGCGATTGTGGGATTGTCTCTGAACACTAAGTTAACGAACAGTGATTCCTTCAAAGCTGATGCTTTTAAGGAAATGAAGACGTTGAGATTCTTGCAACTTGATCATGTACGGCTAACTGGAGATTACGGCTATCTTTCTAAGCAACTGAGATGTATCTCCTGGCAAGGATTTTCTTTAGAGCACATACCTAACAACTTTTACTTGGAAGGTGCAATTGTGATGGATTTCCAGCACAGTAATCTCAGACTACTGTGGAAAGAACCCACGGTTTTACCGTGGCTCAAAATCCTCAATCTTAGTCATTCAAAGTACTTGACAGAAACCCCTGACTTTTCAAAATTACCCAGTCTTGAAAAGCTCATTCTCAAGCATTGTGTGAGTTTGGGCAAGGTACACCAATCGATTGGAGATTTACACAATCTTCTACTAATAAATTTGAAAGGCTGTACAAACCTAAGCAATCTCCCAAGTGAGACATATAAGTTGAAATCCTTGAAAACTCTTATCCTATCTGGCTGTCTGAAGATTGATATCTTTAAAGAAGATATAATGCACATGAAATCCTTGAAAACTCTAATTTCTCACAATACTGCTGTGAAACAAGTTCCCATCTCAGTTGTAAGCTCAAAAAGCATTGGATATATACAGGTAGACGAAGGAAAGGGATTATCACGTACTGTTCTTCATTCTATCATTTTGTCTTGGATGTCCCATACTTTTAATACCCTGTATCGTATGCGTCCGTTTCGTGGCATTTCACCATCTCTAGCTTCCATGAATGTGGAGCATAATGATTTGGTAGATCTAGCTCCAATCCTTAGAACCATTTTAAATCTGCGTACTGTTTTAGTGCAATGTGTCACGGAGTATCTAATACTTCAACAAGTAACAGCAATTTTGGAAGAAGTTCAACAAGTTCGTCGTGTAACTTGGACTACATCTACACAACTTTCCAACCATCCATTCAGTCCATATTCGATTCAATTTGGAGGTTATCAAGAAGAAGTCTTCAATGCTCTCCGCAAAAGCATTTATGATGAGGAATTGGCAGCCAGACAGACTGGTAAAGTTTTTGTCCCTAGTGACAATTATCCTCATTGGTTGGCTTATAAGAATGAGGGACACTCAGTCAATTTCACCGTGCCTGACAATTTTCACATGGATGGAATGATTTTGTGCGTTGAGCATTTATCACGCTTGGGAGACCCAACTCAATATCTTATTTGTGTCTTAATGGTTAATTACACAAAGTGCACAATCCAGTTATTCAATCGAGAAACACTAACTTCTTTGAATGATGTTGATTGGCACGGCGTGATATCACATATGGGATGTGGAGACAAGTTGGAGATTTTTATTATTTTTGAGAAAGGATTTGAAGTCCAGAAGACAGCTGTCTATCTAGTGTGTAATGATCAATTGACAGAAGAAAGCAATTTAACAAGCTGTCTATCTAGTATAGGAGGTCACGTCGGCCAGATAGATGACAAAGAATCGGTTGGAGGTGCGGAACCGATGCTCAGGATCCATATATGA 3186 0.392 MASLFSLSFFLKLVSGEVFIHCLEDDLHENFVSHLMSGLLQAGVEPSLVAVGVLSEKFMPSITRFQIGIVVFTKAYIESSRCVEDLLRIIECHETYGLMIIPVFYDTDQSFLVRVSEENFRNARRAQRRAEAQAKIRITADSGEIYDKRMRPKAKTMQNFSLSRALNRVRNLPTWDESKHRDDAELVEEIVKSVLAKLDRALPVTKFPVELETHVKNVIELFENQPNKVCKIGIWGMGGSGKTTLAKAIYNKIPFTFGDKSFIQDIRKVCQTDGRSGLVQLQEQLLSDVLKYVKIESGEMEKTTIENRLSGKKLFIVLDDVNDIDQLKHLCGNGIWFLAGSVIIITTRHLDLLYQHKVDYVYEMDELNENDSVELFSWHAFREAKPREDFIKLARSTVAYCGGLPLALEVLGSYLSKRSENEWRSVLSKLEIIPNTQIQNILRISFDGLCNEMEKDIFLDVCCFFIGKERDYVTEILNGCGLHADIGIKVLIERGLVKIENKNKLAMHHLLRDMGREIVRQTSTMQLGKRSRLWLPKDVLDVLTKNTGTEAIVGLSLNTKLTNSDSFKADAFKEMKTLRFLQLDHVRLTGDYGYLSKQLRCISWQGFSLEHIPNNFYLEGAIVMDFQHSNLRLLWKEPTVLPWLKILNLSHSKYLTETPDFSKLPSLEKLILKHCVSLGKVHQSIGDLHNLLLINLKGCTNLSNLPSETYKLKSLKTLILSGCLKIDIFKEDIMHMKSLKTLISHNTAVKQVPISVVSSKSIGYIQVDEGKGLSRTVLHSIILSWMSHTFNTLYRMRPFRGISPSLASMNVEHNDLVDLAPILRTILNLRTVLVQCVTEYLILQQVTAILEEVQQVRRVTWTTSTQLSNHPFSPYSIQFGGYQEEVFNALRKSIYDEELAARQTGKVFVPSDNYPHWLAYKNEGHSVNFTVPDNFHMDGMILCVEHLSRLGDPTQYLICVLMVNYTKCTIQLFNRETLTSLNDVDWHGVISHMGCGDKLEIFIIFEKGFEVQKTAVYLVCNDQLTEESNLTSCLSSIGGHVGQIDDKESVGGAEPMLRIHI 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01308 1061 SUPERFAMILY "Winged helix" DNA-binding domain 437 543 IPR036390 -
Vian9g01308 1061 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 740 IPR044974 GO:0006952
Vian9g01308 1061 SUPERFAMILY L domain-like 566 837 - -
Vian9g01308 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 460 IPR027417 -
Vian9g01308 1061 Gene3D Ribonuclease Inhibitor 552 850 IPR032675 -
Vian9g01308 1061 PRINTS Disease resistance protein signature 308 322 - -
Vian9g01308 1061 PRINTS Disease resistance protein signature 710 726 - -
Vian9g01308 1061 PRINTS Disease resistance protein signature 401 415 - -
Vian9g01308 1061 PRINTS Disease resistance protein signature 231 246 - -
Vian9g01308 1061 Pfam NB-ARC domain 212 432 IPR002182 GO:0043531
Vian9g01308 1061 Pfam TIR domain 18 130 IPR000157 GO:0007165
Vian9g01308 1061 Gene3D - 196 361 IPR027417 -
Vian9g01308 1061 Gene3D - 366 450 IPR042197 -
Vian9g01308 1061 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 112 IPR035897 -
Vian9g01308 1061 ProSiteProfiles TIR domain profile. 14 198 IPR000157 GO:0007165
Vian9g01308 1061 Gene3D - 14 195 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01308 Vian-Chr9 27993886 27998157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01308 28 756 WRKY Transcription Factor Family AT4G12020 29.200 4.06e-71 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01308 - - vun:114167037 1394.79