Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01303 ATGGAATTCGCGTCTTCATCATCCAAACTCCCACGGTATTACGACGTGCTCATCAATTTCAATGGAGAAGACATCCTCACGAAATTTGTTTCTCATCTAGATTCTGTCCTCTCGTCCGTTGGACTCACCACTTTCCTTCACCATCAGAATGCAGTGGAGTCAACGCACGTCCAACAACCTATTCTCGATCTGTGTCGGGTAGTAATAGTTGTTTTCACCAAAACCTATTCTGAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATTCAATGGCACCAAACTTATTGCCGACATGTTCTGCCTGTATATTACGAAATTCAGCCATCCGATGTACGTTTTCAGAAGGGTGATTTTGGAAAGGCCTTCAAAGAAACTGCACATCAAACATTTTCAGCACAACAACTTAAGCATGGCATGTCCAGATGGAGCCACGCACTCACCAAAGCTGCAAATTTGTTTGGATGGGATGAGAGTAATCACAGGAGTGATGCTGAACTAGTGCACGAAATTGTTAAGAGCGTTCGTAATTCATCAGTTTTTTCTGCTACTAAATTCCCAGTTGGATTACAATACCCAGTGGAAGAACTAATTCAAACTATAAAAGATAAATCCATGGATGTTTGTACAATAGGGATATGTGGCATGAGAGGATCAGGTAAAACCACCCTTGCCAAAGCCATCTACCATCAAATCCATGGTACATTCATGCATAAAAGTTTCATTGAAGGTATTGCACAATTTAGTGAACCAAGAGGGGGTATACATTTTCAGGAACAACTTCTTTCAGATGTCATAAAAACAAAGGTGAAAATAGATACCCTTGAGATGGGAAAAAATATGATTCGGGACAGACTTTTGGGGAAAAGGGTCCTCATTGTACTTGACGATATGGATGACTATCTTTTATTATTATATCTAAGGGAAAGTCATTCATGGTTAAGTAAAGGAACTGTAATAATCATGACAACAACAGACGACGACCTATTTAAGGAATATCAAGTTCAATCTGTTTTTCGGATAAATCCAATGAATGAAAACAGGTCCCTTGAGCTTCTTAGTTGGCACGCATTTCGAGAAGCAAAACCAAAAGAAGAATACAATTACCTTGCAAGAAGATTAATTTCTCTTTGTGGAGGACTACCTCTAGTTCTTGAAGTCATTGGAAGTACCTTATTTGAAAGGACGGAAGTGGAATGGTATAGTGTATTGTTTAAATTAGAGAAAATTCCCTATCACAATGTTCAACAGAAATTGAAAATAAGCTTGGACCGTTTACGCAATCAATTGGAAAGGAACTTATTCCTTGATTTATGTTGTTTCTTTGTTGGTAAGGACAGAGCCTATGCTACGAATATCCTAAGCAGCTCTGTAGTAGAACCTGATAGTGAAACAGGTGTTCTACATGACTTTAGAGTAGACGCTGATAGTGGAATAAGAGTTCTCATGGAGCGGAACCTCATTAAAGTCAAAAGAAATAACAAATTTGGAATGCATCCTTTACTACAAGAAATGGGAATAGCAATTTTTCGTGAAATTTCAGGAGAGAAACGTTGGAAGAACGGTCAACTGTTGTTTGATGTGGATGCAGAATATGCATTGAAAGTGAATGCTGTAAGAACATTCTTTGTATGTGATTTGAAACCTCTTTTGAAAGTGTTTAATTTCTCATGTACGCAATGCATTTTTTCTTTTTTTACTCTTTAA 1707 0.379 MEFASSSSKLPRYYDVLINFNGEDILTKFVSHLDSVLSSVGLTTFLHHQNAVESTHVQQPILDLCRVVIVVFTKTYSESAWCLHQLQQIIQWHQTYCRHVLPVYYEIQPSDVRFQKGDFGKAFKETAHQTFSAQQLKHGMSRWSHALTKAANLFGWDESNHRSDAELVHEIVKSVRNSSVFSATKFPVGLQYPVEELIQTIKDKSMDVCTIGICGMRGSGKTTLAKAIYHQIHGTFMHKSFIEGIAQFSEPRGGIHFQEQLLSDVIKTKVKIDTLEMGKNMIRDRLLGKRVLIVLDDMDDYLLLLYLRESHSWLSKGTVIIMTTTDDDLFKEYQVQSVFRINPMNENRSLELLSWHAFREAKPKEEYNYLARRLISLCGGLPLVLEVIGSTLFERTEVEWYSVLFKLEKIPYHNVQQKLKISLDRLRNQLERNLFLDLCCFFVGKDRAYATNILSSSVVEPDSETGVLHDFRVDADSGIRVLMERNLIKVKRNNKFGMHPLLQEMGIAIFREISGEKRWKNGQLLFDVDAEYALKVNAVRTFFVCDLKPLLKVFNFSCTQCIFSFFTL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01303 568 Gene3D - 344 434 IPR042197 -
Vian9g01303 568 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
Vian9g01303 568 PRINTS Disease resistance protein signature 378 392 - -
Vian9g01303 568 PRINTS Disease resistance protein signature 285 299 - -
Vian9g01303 568 PRINTS Disease resistance protein signature 210 225 - -
Vian9g01303 568 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Vian9g01303 568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 438 IPR027417 -
Vian9g01303 568 Pfam NB-ARC domain 191 430 IPR002182 GO:0043531
Vian9g01303 568 SMART till_3 13 153 IPR000157 GO:0007165
Vian9g01303 568 Gene3D - 12 173 IPR035897 -
Vian9g01303 568 Pfam TIR domain 14 175 IPR000157 GO:0007165
Vian9g01303 568 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 527 IPR044974 GO:0006952
Vian9g01303 568 Gene3D - 174 338 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01303 Vian-Chr9 27903533 27905318 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01303 11 524 WRKY Transcription Factor Family AT4G12020 25.714 2.58e-38 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01303 - - vum:124845458 959.903