Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01300 ATGTCTTCTTCTTCATCATCACAACCCCAATGGATCTACGACGTCTTCATCAACTTCAGGGGAGGAGACACTCGCAGAGACTTCGTCTCGCATCTCTACTGCGCCCTCTCCAACGCCGGCGTCAACACTTTCTTCGACGACGAGAATCTGCTCAAGGGAACGCCGCTGGAGGAGCTAACGCGAGCGATCGAAGCCTCTCAGATTGCGATCGTCGTTTTCTCCGAAACCTACACCGAATCCACTTGGTGTCTAACCGAGCTTCAGAAAGTAATCGATTGCAACGAATCCTACGGCCAAATCGTTGTGCCCATATTCCACGGCGTCGAACCGTCCATTCTACGCAATCCCAAAGGTCGCTTTCGTGAGGCTTTGGAAGCTGCTGCGAAGAAAAAGTTTTCCGAAGAGCATAGGGAGTATGGGTTGTCGAGATGGAAAAACGTGCTCAAGAAAGCTGCAAATTTCTCTGGTTGGGATGTGAAGAATCACAGGAATACAGCTAAACTAGTGAAGGACATTGTTGATGACATACTGACAAAACTAGACTACGCACTCTTGTCTATAACTGAATTTCCTGTTGGATTGGAATCCCGTGTGCAAGAAGTGGTTGGAATTATAGAAAATCAATCCGCCAAGGTCTGCACCATAGGAATTTGGGGAATGGGTGGATCGGGCAAAACTACCATGGCCAAAGCCATCTACAATCAAATTCATCGTAGATTCAATGATAAGAGTTTCATTGAAAATATTAGGGAAGTTCGTGAAACAGATGGAAGAGGGCATGTTCACTTACAAGAAAAACTTCTTTCAGATGTCCTAAAAACAAAGGTCAAGATACATAGTGTTGGGATGGGAACAACTGTCATCGAGAACAGACTTTCTAGAAAGAAGGTGTTCATTGTACTTGACGATGTGAATGATTTTGGCCAATTAAAAGATCTATGTGGAAATCGTAAATGGTTTGGTAAGGAAAGTGTAATAATCATTACAACTCGAGATCTACACCTACTTGACCTACTTAAAGTTGATTATGTTTATAAAATGGAGGAAATGGACAAAAATGAGTCCCTTGAGCTTTTTAGTTGGCATGCTTTCAGAGAAGCGAAACCAAGAGAAGACTTTGATGAGCTCGCAAGAAATGTAGTTGCTTATTGTGGAGGTCTACCACTAGCTCTTGAAGTCCTTGGTTCTTATTTAATAGAGAGGACAAAGAAAGATTGGGAAAGTGTATTGTTAAAACTAGAAAAAATTCCCAATGATCAAGTTCAAGAGAAATTAAGAATAAGCTTTGATGGTTTATGTGATGACATGGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGACAAAGCCTATGTTATAGAGATACTGAATGGTTGCGGGTTACATGCTGACATTGGAATAACAGTTCTTATTGAGCGTAGTCTCTTAAAAGTTGAAAAGAACAACAAACTTGGAATGCATCAATTGCTACGGGACATGGGAAGAGAGATAATTTGTGAGAGTTCAAGAAAGGATCCTGGGAAGCGGAGTCGATTGTGGTTTCGTGAGGATGTACTTGACGTATTGACAAAGAATACAGGAACTGAAACTATTGAGGGATTGGCTCTGAAATCAGATTTCATTGGCAAAGATTGCTTCAAAGCTTATGCTTTTGAGGAAATGAAGAAATTGAGACTGTTGCAACTTGATGATGTACAGCTTACTGGAAATTATGGTTATCTTTCTAAGCAACTTAGGTGGGTTTGTTGGCAAGGATTTCCTTCAAAATATATACCTAAATTTTTTTTTCTGGAAGGTGCAGTTGTGATTGATTTAAAACACAGTAATCTTCAACTTTTCTGGAAAGAACCTCAGATTTTGAGGTGGCTAAAAATCCTCAATCTTAGTCACTCCAAGTACTTGACTGTAACTCCTGACTTTTCCAAACTACCAAATCTTGAAAAGCTTATTCTCAAAGATTGCCCACGTTTGTGCAAGGTACACAAGTCCATAGGAGGTCTCCGCAATCTTCTACTGATAAACTTAGAAGACTGTAAAAGTCTTGGCAATCTGCCAAGGGGAGTTTATAAGTTGAAATCTGTAAAAACTCTCATCCTTTCAGGTTGTTTGAAGATTGACAGATTAGAAGATGATATAGTGCAGATGGAATCCTTGACAACACTAATTGCTGAAAATACTGCTATGAAACAAGTGCCCTTTTCAATAGTAAAGTCAAAAAGCATTGTTTATATATCGCTATGTGGATTTGAAGGATTTTCGCGTAATGTTTTCCCTTCTATCATTCGTTCTTGGATGTCGCCAACAATGAATCCCCTATCTTATGTTCATCCATTTTGTAGCACATCGTCAAATCTAGTTTCCATGGATATGCAAAGTTATAGTTTGGGTGATCTTGAACAAATGCTTAGCAGCCTCTCAAATCTACGAAGTGTTTTGGTTCAATGTGACACAGAGTCTCAAGTTTCTATGCAAGTAAGGTCACTTTTGGGCAACAGTGTAAATTTTACACAGGTCGAAATATCATCTCAAATATCAAATCATTACTTTAGGTCTTATTTGATTGGAATTGGAAGTTATCAAGAAGTCTTCAATAATCTAAGCGCTAGCATATCTGAGGGATTGGCAACCAGCGAGTCTTGTGATGCTTTTCTCCCAGGTGACAATGATCCTTTTTGGTTGGCCCATATGGGTGAGGGAAATTCAGTGTATTTCACTGTGCCAGAGGATTGTCGCATGAAAGGAATGGCTTTGTGTGTAGTTTATTTATCAGCCCCTGAAATCACAGCAACTGAATATCTTATTAGTGTTTTAATGGTTAATTACACAAGGTACACTATCCAGTTATTCAAGCGAGAGACGGTATTTTCCTTTAATGATCTAGATTGGCAGGGCATAATATCACATTCAGGCCCTGGAGACAAGGTGGAGATTTTTGTGAATTTTGGCCATGGATTGGAGGTCAAGAAGACAGTTATCTATCTAATGTGTGATGAATCAATTGATAAGGAAGTCAAACCTTCTCCTGAGCCAAAGAAGGAACCAAAGAAAAACGTCTTTGAAAGATTTATAAAGAAAATTTTAATATAA 3099 0.3924 MSSSSSSQPQWIYDVFINFRGGDTRRDFVSHLYCALSNAGVNTFFDDENLLKGTPLEELTRAIEASQIAIVVFSETYTESTWCLTELQKVIDCNESYGQIVVPIFHGVEPSILRNPKGRFREALEAAAKKKFSEEHREYGLSRWKNVLKKAANFSGWDVKNHRNTAKLVKDIVDDILTKLDYALLSITEFPVGLESRVQEVVGIIENQSAKVCTIGIWGMGGSGKTTMAKAIYNQIHRRFNDKSFIENIREVRETDGRGHVHLQEKLLSDVLKTKVKIHSVGMGTTVIENRLSRKKVFIVLDDVNDFGQLKDLCGNRKWFGKESVIIITTRDLHLLDLLKVDYVYKMEEMDKNESLELFSWHAFREAKPREDFDELARNVVAYCGGLPLALEVLGSYLIERTKKDWESVLLKLEKIPNDQVQEKLRISFDGLCDDMEKDIFLDVCCFFIGKDKAYVIEILNGCGLHADIGITVLIERSLLKVEKNNKLGMHQLLRDMGREIICESSRKDPGKRSRLWFREDVLDVLTKNTGTETIEGLALKSDFIGKDCFKAYAFEEMKKLRLLQLDDVQLTGNYGYLSKQLRWVCWQGFPSKYIPKFFFLEGAVVIDLKHSNLQLFWKEPQILRWLKILNLSHSKYLTVTPDFSKLPNLEKLILKDCPRLCKVHKSIGGLRNLLLINLEDCKSLGNLPRGVYKLKSVKTLILSGCLKIDRLEDDIVQMESLTTLIAENTAMKQVPFSIVKSKSIVYISLCGFEGFSRNVFPSIIRSWMSPTMNPLSYVHPFCSTSSNLVSMDMQSYSLGDLEQMLSSLSNLRSVLVQCDTESQVSMQVRSLLGNSVNFTQVEISSQISNHYFRSYLIGIGSYQEVFNNLSASISEGLATSESCDAFLPGDNDPFWLAHMGEGNSVYFTVPEDCRMKGMALCVVYLSAPEITATEYLISVLMVNYTRYTIQLFKRETVFSFNDLDWQGIISHSGPGDKVEIFVNFGHGLEVKKTVIYLMCDESIDKEVKPSPEPKKEPKKNVFERFIKKILI 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01300 1032 Gene3D - 349 433 IPR042197 -
Vian9g01300 1032 Gene3D - 6 183 IPR035897 -
Vian9g01300 1032 Gene3D - 184 342 IPR027417 -
Vian9g01300 1032 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 157 IPR035897 -
Vian9g01300 1032 PRINTS Disease resistance protein signature 384 398 - -
Vian9g01300 1032 PRINTS Disease resistance protein signature 291 305 - -
Vian9g01300 1032 PRINTS Disease resistance protein signature 669 685 - -
Vian9g01300 1032 PRINTS Disease resistance protein signature 214 229 - -
Vian9g01300 1032 SUPERFAMILY L domain-like 490 818 - -
Vian9g01300 1032 Pfam NB-ARC domain 197 417 IPR002182 GO:0043531
Vian9g01300 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 443 IPR027417 -
Vian9g01300 1032 ProSiteProfiles TIR domain profile. 11 180 IPR000157 GO:0007165
Vian9g01300 1032 SMART till_3 12 154 IPR000157 GO:0007165
Vian9g01300 1032 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 182 - -
Vian9g01300 1032 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 762 IPR044974 GO:0006952
Vian9g01300 1032 Pfam TIR domain 13 183 IPR000157 GO:0007165
Vian9g01300 1032 Gene3D Ribonuclease Inhibitor 538 885 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01300 Vian-Chr9 27865538 27870511 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01300 13 766 WRKY Transcription Factor Family AT4G12020 29.235 8.50e-78 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01300 - - gmx:100815297 1684.08