Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01298 ATGGAAAATCAGTTCTTTATCAATTCTGGGCTGTCACAAACACAGCATCCCCTTCACTTTGAACCTTCACCACCACCACCACCACCTTCTTCTTCTTCAGTGCCCTCTTGGCAATCACTCTCACCCACCATGGGAATTCAACCAACACTTCTGAATTGTGCCTCTGAGCAGACCCATGATTGCTTTTACAACCCCAATTGGGAAAAATCAACAGATCATGCACTTCACTTTGATTCCTCAGCACTCAGTTCAATGGTCTCGTCTCCTGCGGCATCATCCAACCCCAGCAGCAACATGTCCAATGATAATTTCATCATCAGGGAATTGGTGGGGAGATTGGGAGCTATTGGGAGTTCTGATGAGATCCCACAACACTCTCCTCACCCTTTGGTTGTGGCCTCTTCTTACATGAATAATGGCAGTGGCAGCCCCAATACTTCTTGTTACACCACTCCTTTGAGTTCCCCTCCAAAGGTGAAGACTGTGCAGAGCTTGGTGAATGAGAGGTTGGCAAATTTGGGAGGAAAGTCAATTACTTTGAATTCCAGTGTGGCCGAATTCTCTGCTGACCCTGGTTTCGCGGAGAGGGCTGCAAAGTTTTCTTGCTTTGGTAGCAGGAGTTTCAATGGTAGGAACGTCCAATTGGGGGTGAACAATGGTGAATTGGCTCAAAGATCTGCATCAGTGGTGGAAAATGGTGGAAAGTTATCTAGAATCTCAAGTAGTCCTTTGCTCAAGACACTCGGATCTCAAATGGGTACCGCAGAGAACAAGAATTCAGCAATTCGGGACCAGGAGAAAGATGAGGTTGCCAATTCTCAAGAGGAATCTACCATATCTGAGCAGACACCAAATGGAGAAATTGGGATGAAAAATTGCCAAGATATGACGAATTCCAGGAAAAGAAAAGCATCTTCCAAAGGAAAAACTAGAGAAACTTCTAACTCCATCAAGGGTGTTGAAGTCAGTGAGGATTCAAATTCAAAGCGAACCAAGCCAAACGAGGGTGAGGGAAACGAAAATGGACCGGTGAAGGTTGAGGAAGAGTCCAAAGCAGTGGAAGATAAACAGAACAAAAGCAACTCAAAACCTCCTGAGCCACCAAAAGATTACATTCATGTGAGAGCAAGAAGAGGCCAAGCCACTGACAGTCATAGTCTTGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAACAAGGTCACTGGAAAAGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTGCAGCGTCAAGTTGAGGTATTTCAATCTAATAATTCTTTGGCAACACACCCAAATCCAACATTCCCTCTAGATTCCTCAGCACAAGCCTTTTATGGGCACCAGCATCAGCAAAACCCAGTTATCCATAATAACATACCTAACAGAACGGTGACCCACTGCTCAGTGGACCCATTAGACACATCTTTGTGCCAAAATCTTGCAATGCAATTACCCCCCCTAAATGGGTTTAATGAAGTTGCCTCTCAGTTTCCATTAACATTCTGTGAGGAGGATCTGCACACCATTGTGCAGATGGGGTTTGGGCAAACTACAAACTGGAAAACACCAATTCAATCCCCAAGTTTCAACGGTAATATAACAGAAAAGTCAGACATTATTGACATGTTAATTGAATATTAG 1689 0.4411 MENQFFINSGLSQTQHPLHFEPSPPPPPPSSSSVPSWQSLSPTMGIQPTLLNCASEQTHDCFYNPNWEKSTDHALHFDSSALSSMVSSPAASSNPSSNMSNDNFIIRELVGRLGAIGSSDEIPQHSPHPLVVASSYMNNGSGSPNTSCYTTPLSSPPKVKTVQSLVNERLANLGGKSITLNSSVAEFSADPGFAERAAKFSCFGSRSFNGRNVQLGVNNGELAQRSASVVENGGKLSRISSSPLLKTLGSQMGTAENKNSAIRDQEKDEVANSQEESTISEQTPNGEIGMKNCQDMTNSRKRKASSKGKTRETSNSIKGVEVSEDSNSKRTKPNEGEGNENGPVKVEEESKAVEDKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEVFQSNNSLATHPNPTFPLDSSAQAFYGHQHQQNPVIHNNIPNRTVTHCSVDPLDTSLCQNLAMQLPPLNGFNEVASQFPLTFCEEDLHTIVQMGFGQTTNWKTPIQSPSFNGNITEKSDIIDMLIEY 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01298 562 Gene3D - 377 448 IPR036638 GO:0046983
Vian9g01298 562 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 380 430 IPR011598 GO:0046983
Vian9g01298 562 SMART finulus 386 436 IPR011598 GO:0046983
Vian9g01298 562 MobiDBLite consensus disorder prediction 323 371 - -
Vian9g01298 562 MobiDBLite consensus disorder prediction 1 41 - -
Vian9g01298 562 MobiDBLite consensus disorder prediction 275 295 - -
Vian9g01298 562 MobiDBLite consensus disorder prediction 19 33 - -
Vian9g01298 562 MobiDBLite consensus disorder prediction 250 371 - -
Vian9g01298 562 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 267 466 IPR024097 GO:0006355
Vian9g01298 562 MobiDBLite consensus disorder prediction 260 274 - -
Vian9g01298 562 MobiDBLite consensus disorder prediction 1 18 - -
Vian9g01298 562 Pfam Helix-loop-helix DNA-binding domain 384 431 IPR011598 GO:0046983
Vian9g01298 562 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 378 442 IPR036638 GO:0046983
Vian9g01298 562 CDD bHLH_AtBPE_like 370 455 - -
Vian9g01298 562 FunFam Basic helix-loop-helix transcription factor 377 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01298 Vian-Chr9 27792652 27795347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01298 1 517 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 39.194 3.03e-87 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian9g01298 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01298 - - gmx:100801233 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01088 2 21051742 21053987 Vian9g01298 9 27792652 27795347 PCT