Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01296 ATGGATAACGTCTCCTCATCAAACAAACTCCCACGGAAGTACGATGTGCTCATCAACTTCAACGGAGAAGACATCCACAGAAAATTTGTTTCTCATCTCAATTCTGTCCTCTCTACTTTTGGTCTCACCACTTTCCTTCATCACCACGATGCAGTGAACTCAACTCACATCCAAGAACCTATTCTCAGCCACTGTCGAGTAGCAATTGTAGTTTTCACCCAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCAACATATCATCAAATGGCACCAAACTTATGGCCGACATGTTCTGCCCGTATATTATGAAATCCAGCCATCTGATGTACGTCTTCAAAAGGGTGACTTTGGAAAAGCCTTAAAGGCAACTGCACGACAAACATTTTCAGGACGAGAACTAAAGCATGGAATGTCCAGGTGGAGCCATGCACTCAACAAAGCTGCAAATTTCTTTGGATGGGATGAGAGTAATCACAGGAGTGATGCTGAACTAGTGGACAAAATTATTAAGAGCGTTATTAATTTACCGGTCTTGTCGGCTACTAAATTTCCAGTTAGATTACAAACATACGTGGAAGACCTTATTCAAACTATAAAAAATAAATCCACTGAAGTTTGTATGATAGAGATATGTGGAGAGGAAGGATCTGGTAAAACCACTCTTGCCAAAGCCATCTACAATGAAATTCATTGGACATTCAAGGAGAAAAGTTTCATTGAAAATATTTCACAAGTTAGCGGAATAAGAGGGTATCTTCGTTTACTGGAACAACTACTTTTAGATGTCCTAAAACAAAAGGTGGAGATTCCTAGCATTGATGTGGGAAGAAGAATGATTCGGGAAACACTTTACGGAAAAAGGGTGCTCATTGTACTTGACGATGTTTCATACTATAGTTTACTCGACCTATGGAACTGTAGTAAATGGTTCGGCGAAGGAACTGTAATAATCGTTACATCAACATTTGAAAGAGTGCTGAAAGATCATGCTAATTCTGTCTTTCAGGTAGAGCGAATGAACGAAGAGGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAACCAAAACCAAAAGAAGAATACAAAGACCTTGCAAGAAGTGTAGTTAGATATTGTGGAGGACTACCAATAGCTCTTGAAGTCGTTGGAAGTTGTTTATTTGAAAAGACGAAAGAAGAATGGAACACTGTATTGTTAAAATTTGCGATAGTTGGCAGGCATCGTGTTTCAGAGATAATAAAAATAAGCATCGAAGGTGCACTCAATGAAATGGAAAAAGATATATTCCTTGATGTATGTTGTTTCTTTGTTGGTAAGAGCAGAGCATATGTTAGGAAGATCCTAAATGGCTGTGGAGTAGACGCTGATATTGCAATAAGAGTTCTCATCCAGCGTAACCTCATCAAAATTGACAAAAACAACAAATTTGGAATGCATCCTTTGCTACAAAAAATCGGAATACAAATTATTCAAGAAAATATTGTAAAGGATCTTGGGAATAACAGGCGACTGTGGTTTGATAAGGATACAAAATATGGGACAGAAGACATGCAGTGGATGCCTGTGAAACTGCCTTCAGTTCTCATTGCCTTAAAAAGTGTTCAACCGACTGTAAATTCTCAATACCTTATTAAGAAACTAAGATGGATCAGTTTGCATGGGTTTTCTTCAGAATGTCTACCTAACAACTTTTATGAGCATGATGCAATAGCTATTGATTTAAAACGCAGTCTTCTTCTATTTCTCTGGAAAACACCCCAGGTTTTATTACCACCCACTCTCGTTAAATCACAACTTAATTAA 1815 0.3829 MDNVSSSNKLPRKYDVLINFNGEDIHRKFVSHLNSVLSTFGLTTFLHHHDAVNSTHIQEPILSHCRVAIVVFTQTYSQSAWCLHQLQHIIKWHQTYGRHVLPVYYEIQPSDVRLQKGDFGKALKATARQTFSGRELKHGMSRWSHALNKAANFFGWDESNHRSDAELVDKIIKSVINLPVLSATKFPVRLQTYVEDLIQTIKNKSTEVCMIEICGEEGSGKTTLAKAIYNEIHWTFKEKSFIENISQVSGIRGYLRLLEQLLLDVLKQKVEIPSIDVGRRMIRETLYGKRVLIVLDDVSYYSLLDLWNCSKWFGEGTVIIVTSTFERVLKDHANSVFQVERMNEEESLELLSWHAFREPKPKEEYKDLARSVVRYCGGLPIALEVVGSCLFEKTKEEWNTVLLKFAIVGRHRVSEIIKISIEGALNEMEKDIFLDVCCFFVGKSRAYVRKILNGCGVDADIAIRVLIQRNLIKIDKNNKFGMHPLLQKIGIQIIQENIVKDLGNNRRLWFDKDTKYGTEDMQWMPVKLPSVLIALKSVQPTVNSQYLIKKLRWISLHGFSSECLPNNFYEHDAIAIDLKRSLLLFLWKTPQVLLPPTLVKSQLN 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01296 604 Gene3D - 179 340 IPR027417 -
Vian9g01296 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 435 IPR027417 -
Vian9g01296 604 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Vian9g01296 604 Gene3D - 11 178 IPR035897 -
Vian9g01296 604 PRINTS Disease resistance protein signature 376 390 - -
Vian9g01296 604 PRINTS Disease resistance protein signature 285 299 - -
Vian9g01296 604 PRINTS Disease resistance protein signature 210 225 - -
Vian9g01296 604 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
Vian9g01296 604 Pfam NB-ARC domain 192 406 IPR002182 GO:0043531
Vian9g01296 604 Gene3D - 341 423 IPR042197 -
Vian9g01296 604 SUPERFAMILY "Winged helix" DNA-binding domain 412 513 IPR036390 -
Vian9g01296 604 SMART till_3 13 153 IPR000157 GO:0007165
Vian9g01296 604 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 583 IPR044974 GO:0006952
Vian9g01296 604 Pfam TIR domain 13 175 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01296 Vian-Chr9 27733448 27735451 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01296 4 588 WRKY Transcription Factor Family AT4G12020 25.714 7.70e-46 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01296 - - vum:124837950 840.876