LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian9g01294	ATGGGTATCTCCAGAGATTCTATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGGCCTGGAGGAAAAAGAGAAAGTATGAGCTTGGTCGCCAGCCTGCTAACACTAAGCTGTCAAGCAACAAGACTGTCAGGAGGATCCGTGTTAGAGGTGGCAATGTGAAGTGGAGAGCACTGAGATTGGATACTGGAAACTACTCTTGGGGAAGTGAAGCTGTAACTCGCAAGACTCGTATACTTGATGTGGTATACAACGCCTCAAACAATGAGCTTGTGCGTACTCAGACCCTTGTCAAAAGTGCTATTGTTCAGGTTGATGCCGCTCCCTTCAAACAGTGGTATCTTCAGCACTATGGTGTTGACATTGGTAGGAAGAAGAAGACAGCTGCAAAGAAGGATTCCGCAGAGGAGGGTGACGCTGCAGCAGCAGAAGAAGCCAAAAAGAGTAACCATGTGCAAAGAAAACTAGAAAAGCGCCAGAAGGATCGCAAGCTTGATGCTCACATTGAGGAGCAGTTTGGTGGTGGTCGTTTACTTGCTTGCATTTCCTCTCGACCTGGTCAATGTGGCAGATCTGATGGCTACATTCTGGAAGGTAAAGAGTTGGAATTTTACATGAAGAAACTCCAGAAGAAGAAGGGGAAAGGTGCTGCCTGA	657	0.4749	MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAKKDSAEEGDAAAAEEAKKSNHVQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRSDGYILEGKELEFYMKKLQKKKGKGAA	218

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian9g01294	218	NCBIfam	ribosomal protein eS8	1	199	IPR001047	GO:0003735\|GO:0005840\|GO:0006412
	Vian9g01294	218	ProSitePatterns	Ribosomal protein S8e signature.	11	30	IPR018283	GO:0003735\|GO:0005840\|GO:0006412
	Vian9g01294	218	Gene3D	Ribosomal protein S8e, subdomain	108	176	IPR042563	-
	Vian9g01294	218	MobiDBLite	consensus disorder prediction	11	26	-	-
	Vian9g01294	218	CDD	Ribosomal_S8e_like	5	197	-	-
	Vian9g01294	218	PANTHER	40S RIBOSOMAL PROTEIN S8	1	215	IPR001047	GO:0003735\|GO:0005840\|GO:0006412
	Vian9g01294	218	Gene3D	-	27	213	-	-
	Vian9g01294	218	Pfam	Ribosomal protein S8e	5	197	IPR022309	-
	Vian9g01294	218	MobiDBLite	consensus disorder prediction	131	163	-	-
	Vian9g01294	218	FunFam	40S ribosomal protein S8	32	161	-	-
	Vian9g01294	218	MobiDBLite	consensus disorder prediction	1	38	-	-
	Vian9g01294	218	FunFam	40S ribosomal protein S8	109	176	-	-
	Vian9g01294	218	FunFam	40S ribosomal protein S8	162	215	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian9g01294	Vian-Chr9	27677622	27679810	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian9g01294	1	206	Cytoplasmic Ribosomal Protein Gene Family	AT5G59240	84.951	6.94e-129	360

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian9g01294	K02995		-	gmx:100794937	372.859