Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01293 ATGGACGAAGATTTCGACATGCCGCCGGCGGATTCCATGAACGACGATTTCGACTTCGCCGGCGCCGACGGCGGGGACATTGACCCTCCCGTTCTCAAGGTTGGTGAGGAGAAGGAAATTGGAACACAGGGCTTGAAGAAGAAACTCCTCAAGAAAGGTGAAGGATGGAACACTCCTGAAGTTGGTGACGAGGTTCAAGTTCACTACACTGGGACGTTGCTTGATGGCACTAAGTTTGATTCCAGCAGAGATAGGGGAACACCTTTCGGTTTCACACTTGGACAAGGGCAAGTTATTAAAGGATGGGATCAAGGTATTGCAACTATGAAGAAAGGTGAGAATGCCCTTTTTACCATCCCAGCCGAGCTAGCGTATGGTGAATCTGGTTCTCCTCCAACAATTCCCCCCAATGCAACTCTTCAGTTTGACGTGGAGCTGTTGTCTTGGACTAGTGTTAAGGACATATGTAAGGATGGAGGTTTATTTAAGAAGATAGTTACTGAGGGGGAAAAATGGGAGAACCCCAAGGATCTTGATGAAGTTTTAGTGAATTACGAAGCACGTCTTGAAGATGGGACTCTAGTAGCAAAATCTGATGGAGTGGAGTTCACAGTCAAAGATGGTTATTTTTGTCCTGCTTTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTTTGACTGTGAAGCCACAATATGGATTTGGTGAGAAGGGTAAGCCAGCACATGGTGATGAAGGCGCTGTTCCTCCAAATGCATCATTGGAGATTTCTCTTGAGTTAGTTTCTTGGAAGACTGTGTCAGAGGTAACTGATGACAAGAAGGTCATTAAGAAGATCATCAAAGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCAGTTGTGAAATTGAAAGTAATTGGTACGCTGCAAGATGGTACCTTGTTTTTGAAGAAGGGTCATGATAACGAAGGGGAGCTGTTGGAATTCAAAACTGATGAGGAACAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTGAGGTGGCATTGTTAACTATTGCGCCTGAGTATGGTTTTGGCTCATCGGAGTCTAAACAGGAACTTGCTGTGGTTCCTGCTAATTCTACTTTGTATTATGAGGTTGAGCTAGTATCGTTTGAGAAGGAAAAGGAGTCATGGGACATGAACACACCAGAGAAGATTGAAGCTGCTGGCAAGAAGAAAGAAGAAGGGAATGCATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATATGAAAAGGCTGTAAAGTTCATAGAATACGATACCTCCTTCAGTGAAGAGGAGAAGAAGAGCTCCAAGACCTTGAAGGTTGCCTGTAATCTAAACAATGCAGCGTGCAAATTGAAGCTAAAAGATTATAAACAAACAGAGAAATTGTGCACAAAGGTACTGGAACTTGAGAGCACTAACGTGAAGGCTCTCTATAGAAGGGCCCAGGCATATAGCCACTTGGCTGATTTAGATTTGGCTGAATTTGATATTAAGAAAGCTCTTGATCTTGACCCTGACAACAGGGAAGTCAAGCTTGAGTACAGGACCCTGAAGGAAAAGATGAAGGAATACAACAAAAAAGAGGCAAAATTTTATGGAAATATTTTCAACAAACTGCATAAGCTAGATTCTTTGGACAATAACAAAGCAGAGTCGAAGGATGCCCAACCCATGAATGTCGACAGCAAGGCATAA 1737 0.4324 MDEDFDMPPADSMNDDFDFAGADGGDIDPPVLKVGEEKEIGTQGLKKKLLKKGEGWNTPEVGDEVQVHYTGTLLDGTKFDSSRDRGTPFGFTLGQGQVIKGWDQGIATMKKGENALFTIPAELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGLFKKIVTEGEKWENPKDLDEVLVNYEARLEDGTLVAKSDGVEFTVKDGYFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAHGDEGAVPPNASLEISLELVSWKTVSEVTDDKKVIKKIIKEGEGYERPNEGAVVKLKVIGTLQDGTLFLKKGHDNEGELLEFKTDEEQVIDGLDRAVLTMKKGEVALLTIAPEYGFGSSESKQELAVVPANSTLYYEVELVSFEKEKESWDMNTPEKIEAAGKKKEEGNALFKAGKYARASKRYEKAVKFIEYDTSFSEEEKKSSKTLKVACNLNNAACKLKLKDYKQTEKLCTKVLELESTNVKALYRRAQAYSHLADLDLAEFDIKKALDLDPDNREVKLEYRTLKEKMKEYNKKEAKFYGNIFNKLHKLDSLDNNKAESKDAQPMNVDSKA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01293 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 62 150 IPR001179 GO:0003755
Vian9g01293 578 SMART tpr_5 405 438 IPR019734 GO:0005515
Vian9g01293 578 SMART tpr_5 488 521 IPR019734 GO:0005515
Vian9g01293 578 SMART tpr_5 454 487 IPR019734 GO:0005515
Vian9g01293 578 Gene3D Tetratricopeptide repeat domain 391 548 IPR011990 GO:0005515
Vian9g01293 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 178 267 IPR001179 GO:0003755
Vian9g01293 578 PANTHER PEPTIDYLPROLYL ISOMERASE 37 151 - -
Vian9g01293 578 MobiDBLite consensus disorder prediction 1 32 - -
Vian9g01293 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 295 388 IPR001179 GO:0003755
Vian9g01293 578 Pfam Tetratricopeptide repeat 488 521 IPR001440 GO:0005515
Vian9g01293 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 289 385 IPR001179 GO:0003755
Vian9g01293 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 173 263 IPR001179 GO:0003755
Vian9g01293 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 57 147 IPR001179 GO:0003755
Vian9g01293 578 SUPERFAMILY FKBP-like 154 270 - -
Vian9g01293 578 Gene3D - 154 267 IPR046357 GO:0003755
Vian9g01293 578 Gene3D - 35 153 IPR046357 GO:0003755
Vian9g01293 578 ProSiteProfiles TPR repeat profile. 488 521 IPR019734 GO:0005515
Vian9g01293 578 Coils Coil 521 541 - -
Vian9g01293 578 Gene3D - 268 389 IPR046357 GO:0003755
Vian9g01293 578 FunFam Peptidylprolyl isomerase 393 548 - -
Vian9g01293 578 FunFam Peptidylprolyl isomerase 154 267 - -
Vian9g01293 578 SUPERFAMILY FKBP-like 30 154 - -
Vian9g01293 578 SUPERFAMILY TPR-like 394 552 IPR011990 GO:0005515
Vian9g01293 578 SUPERFAMILY FKBP-like 272 405 - -
Vian9g01293 578 FunFam Peptidylprolyl isomerase 35 153 - -
Vian9g01293 578 FunFam Peptidylprolyl isomerase 268 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01293 Vian-Chr9 27669973 27674856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01293 1 562 Calmodulin-binding Proteins AT3G25230 79.715 0.0 883