Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01291 ATGGAACCTAACGGGATTGGCGAACTCAAGGTACCGTTGTTGCAGCCTCCGGAGGCTGCCGCTGCCGCCGTTAGGACAGTCATGTTTCAACTGAGCGACATCAAGTGTGCTTCGTGCGTAAATTCCGTCGAGGCCGTTGTTGGGGGCCTTAACGGCGTGAAAAGCGTCGCCGTTTCGCCGCTTGATGGCCGCGCTGCCATCAAGTTTGACCCCAAGTTGGTTACTGTGAAACAAGTAAAAGAAGGCATAGAGGAGAGTGGGTTTGGAGTTGGTGAGCTTCATGAACAGGACATTGCAGTGTGCCGGGTGCAGATTAAAGGAATGGCATGCACAAGCTGCTCTGAGTCTGTTGAGAACGCCCTTCAAATGGTTGAAGGGGTGAAAAAGGCAATAGTTGGTCTTGCTTTGGAGGAGGCAAAAGTGCACTTTGATCCTAATCTAACAGATGTTGACAAGATAATTGAGACCATAGAGGATACAGGTTTTGGAGCTGATCTTATTAGCTCTGGGAATGATGCAAACAAAGTGTTTCTAAAGCTGGAAGGTGTTGATTCCGTAGAAGATGTAAATTTATTAATGTCTTCTCTTGAGTTAGCTGCGGGGGTGAACCATGTCGAGATGGATTTGTCAGAACATAAAGTTACAGTTAGCTATGATCCGGATGTTACAGGTCCAAGGTCTCTCATTCACCGTGTTCAGGAAGCTAGCTGTGGCCCCAAGAAGTATCAAGCAACCTTATACTCTCCTTCGACCCAAAGAGGAAGGGATAAGGTGAACGAAATCCGTATGTATAGGGACCAATTTTTGTTTAGCTGCTTATTTTCTGTTCCCGTGTTTGTATTTGCCATGGTGCTGCCCATGTTTCCTCCTTATGGAAACTGGTTAAACTACAGGATCCACAACATGCTTACTCTTGGGCTGTTTTTAAGATGGATTCTTTGCACGCCTGTCCAGTTCATAATTGGCAAAAGGTTCTATGTTGGATCATATCACGCACTGAAGCGAAAATCTGCTAACATGGATGTGCTTGTTGCACTTGGCACCAATGCTGCTTATTTTTACTCTCTATATATTTTAATAAAAGCACTGACTTCGGATACATTTGAAGGACAAGATTTCTTTGAGACAAGTTCTATGTTGATATCCTTTATTCTATTAGGGAAGTATTTGGAAATTGTGGCTAAAGGGAAAACATCGGATGCTTTAGGAAAGCTCACTCAGCTTGTTCCTGATAAAGCTTATTTAGTAGCAATTGATAATGATGGAAATATAACCACCGAGACAGAAATTGACACTCAACTTATACAAAAAAATGACATAATTAAGATTGTTCCTGGGGCCAAAATTCCTGTTGATGGAATTGTTATAAAAGGGCAAAGCTACGCAAATGAAAGTATGATCACTGGGGAGGCAAGACCTGTTGATAAAAGCCCAGGAGACAAGGTCATCAGTGGAACCATCAATGAAAATGGATGCTTGCTTGTTAAGGCCACACATGTTGGATCAGACACTGCACTTTCTCAAATAGTTCAACTCGTTGAAGCTGCTCAACTTGCCAAAGCACCAGTTCAAAAACTTGCTGACAATATTTCAAGGGTTTTTGTTCCAATAACGCATTACAATAGTGGAATATGCCATCAGTTATCTAATACTTTTGTTGCTTCACCTTTATGTTTATATGCTGATATTGTGGTTGTTGCGGCACTAATAACTTGGCTTGGATGGTTCATTCCTGGGAAAGCTGGTATTTTCCCTAAACATTGGATACCAACAGAAATGGATGCATTCGAGCTTGCTTTACAGTTTGCTATTTCTGTGTTGGTTGTTGCTTGCCCATGTGCTCTGGGACTTGCAACACCAACAGCAGTCATGGTTGCTTCAGGCATGGGTGCTTCTCAAGGTGTGCTCATAAAGGGTGGAAATGCACTGGAAAAGGCACACAAGGTAACTGTTATTGTGTTTGATAAGACTGGTACTTTAACAGTTGGGAAGCCAGAGGTAGTTAGCGCAGTTCTGTTTTCTGAGTTTTCTATGGAGGAGTTATGTGACATGACAATTGCTGTGGAGGCAAGCAGTGAGCACCCGATAGCAAAAGCTGTTGTGGTACACGCGAAGAGGCTGCGCAAGAAGTTTGGTTCTTCCACGGTGGAAATTTTGGATGTTGATGATTTTGAGGTACACATGGGAGCTGGTGTAAGTGGAAAAGTTGGTGACAGAACGGTTGTAGTTGGAAACAAGAGACTCATGCATGCTTGTAATATTCTAATAGGTTCTCAGGTTGAGAAGTACATCTCTGAAAATGAAAGTCTGGCTAGAACTTGCATTTTAGTTTCAATTGATGGAAAGATTGCTGGTGCATTCTGTGTAACTGATCCTGTAAAGCCAGAGGCTAGACGGGTTGTATCTTTCCTCCACTCCATGGGCATCTCAAGCATCATAGCGACTGGGGATAACCGTGCTACCGCAACTGCTATAGCAAATGAAGTAGGTATTGATGAGGTTTTTGCTGAGACAGATCCTGTTGGCAAAGCTAACAAGGTGAAAGACTTGCAGATGAAAGGAATGACTGTGGCAATGGTAGGTGATGGAATAAATGACTCTCCAGCCCTGGTTGCTGCTGATGTTGGGATGGCAATTGGTGCTGGAACTGACATAGCCATAGAAGCAGCTGATATAGTTCTGGTCAAAAGCAGTTTGGAAGATGTGATCACAGCCATAGATTTATCCAGAAAGACCATGTCACGCATCCGACTGAACTACATTTGGGCTCTTGGTTACAACATTCTAGGCATGCCAATTGCTGCTGGAGTCTTGTACCCTTTTGCAGGAATCAGATTGCCCCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCTTCTCTTAGTGTGGTTTCATCCTCTCTTCTGCTGCAGTTCTATAAAAAACCACTGCATATAGAATCCCCTTGA 2946 0.4352 MEPNGIGELKVPLLQPPEAAAAAVRTVMFQLSDIKCASCVNSVEAVVGGLNGVKSVAVSPLDGRAAIKFDPKLVTVKQVKEGIEESGFGVGELHEQDIAVCRVQIKGMACTSCSESVENALQMVEGVKKAIVGLALEEAKVHFDPNLTDVDKIIETIEDTGFGADLISSGNDANKVFLKLEGVDSVEDVNLLMSSLELAAGVNHVEMDLSEHKVTVSYDPDVTGPRSLIHRVQEASCGPKKYQATLYSPSTQRGRDKVNEIRMYRDQFLFSCLFSVPVFVFAMVLPMFPPYGNWLNYRIHNMLTLGLFLRWILCTPVQFIIGKRFYVGSYHALKRKSANMDVLVALGTNAAYFYSLYILIKALTSDTFEGQDFFETSSMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAYLVAIDNDGNITTETEIDTQLIQKNDIIKIVPGAKIPVDGIVIKGQSYANESMITGEARPVDKSPGDKVISGTINENGCLLVKATHVGSDTALSQIVQLVEAAQLAKAPVQKLADNISRVFVPITHYNSGICHQLSNTFVASPLCLYADIVVVAALITWLGWFIPGKAGIFPKHWIPTEMDAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGNALEKAHKVTVIVFDKTGTLTVGKPEVVSAVLFSEFSMEELCDMTIAVEASSEHPIAKAVVVHAKRLRKKFGSSTVEILDVDDFEVHMGAGVSGKVGDRTVVVGNKRLMHACNILIGSQVEKYISENESLARTCILVSIDGKIAGAFCVTDPVKPEARRVVSFLHSMGISSIIATGDNRATATAIANEVGIDEVFAETDPVGKANKVKDLQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFAGIRLPPWLAGACMAASSLSVVSSSLLLQFYKKPLHIESP 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01291 981 Gene3D - 20 91 - -
Vian9g01291 981 Gene3D - 644 910 IPR023214 -
Vian9g01291 981 Gene3D - 100 170 - -
Vian9g01291 981 CDD HMA 103 164 IPR006121 GO:0046872
Vian9g01291 981 FunFam Copper-transporting ATPase 1, putative 395 517 - -
Vian9g01291 981 FunFam ATPase copper transporting beta 22 93 - -
Vian9g01291 981 SUPERFAMILY HMA, heavy metal-associated domain 96 170 IPR036163 GO:0046872
Vian9g01291 981 Pfam E1-E2 ATPase 560 631 - -
Vian9g01291 981 Pfam E1-E2 ATPase 411 538 - -
Vian9g01291 981 FunFam Copper-transporting ATPase HMA5 98 169 - -
Vian9g01291 981 CDD HMA 28 90 IPR006121 GO:0046872
Vian9g01291 981 Gene3D - 395 517 - -
Vian9g01291 981 SUPERFAMILY Calcium ATPase, transduction domain A 427 513 IPR008250 -
Vian9g01291 981 ProSiteProfiles Heavy-metal-associated domain profile. 99 165 IPR006121 GO:0046872
Vian9g01291 981 SUPERFAMILY Calcium ATPase, transmembrane domain M 376 645 IPR023298 -
Vian9g01291 981 PRINTS Copper-transporting ATPase 1 signature 26 51 - -
Vian9g01291 981 PRINTS Copper-transporting ATPase 1 signature 123 144 - -
Vian9g01291 981 PRINTS Copper-transporting ATPase 1 signature 52 75 - -
Vian9g01291 981 NCBIfam HAD-IC family P-type ATPase 588 937 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian9g01291 981 CDD P-type_ATPase_Cu-like 268 956 - -
Vian9g01291 981 SFLD p-type atpase 635 912 IPR044492 -
Vian9g01291 981 Gene3D - 172 248 - -
Vian9g01291 981 Gene3D - 664 793 IPR023299 GO:0000166
Vian9g01291 981 FunFam Probable copper-transporting ATPase HMA5 773 917 - -
Vian9g01291 981 NCBIfam copper ion binding protein 103 163 IPR006122 GO:0005507
Vian9g01291 981 NCBIfam copper ion binding protein 28 90 IPR006122 GO:0005507
Vian9g01291 981 ProSiteProfiles Heavy-metal-associated domain profile. 174 240 IPR006121 GO:0046872
Vian9g01291 981 NCBIfam heavy metal translocating P-type ATPase 340 969 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vian9g01291 981 Pfam Heavy-metal-associated domain 29 88 IPR006121 GO:0046872
Vian9g01291 981 Pfam Heavy-metal-associated domain 103 162 IPR006121 GO:0046872
Vian9g01291 981 SFLD Haloacid Dehalogenase 635 912 - -
Vian9g01291 981 PRINTS P-type cation-transporting ATPase superfamily signature 785 796 - -
Vian9g01291 981 PRINTS P-type cation-transporting ATPase superfamily signature 653 667 - -
Vian9g01291 981 PRINTS P-type cation-transporting ATPase superfamily signature 463 477 - -
Vian9g01291 981 PRINTS P-type cation-transporting ATPase superfamily signature 807 817 - -
Vian9g01291 981 PRINTS P-type cation-transporting ATPase superfamily signature 860 879 - -
Vian9g01291 981 PRINTS P-type cation-transporting ATPase superfamily signature 883 895 - -
Vian9g01291 981 ProSitePatterns Heavy-metal-associated domain. 31 59 IPR017969 GO:0046872
Vian9g01291 981 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 21 976 - -
Vian9g01291 981 ProSitePatterns Heavy-metal-associated domain. 105 134 IPR017969 GO:0046872
Vian9g01291 981 ProSiteProfiles Heavy-metal-associated domain profile. 25 91 IPR006121 GO:0046872
Vian9g01291 981 Pfam haloacid dehalogenase-like hydrolase 650 874 - -
Vian9g01291 981 SUPERFAMILY HMA, heavy metal-associated domain 23 91 IPR036163 GO:0046872
Vian9g01291 981 SUPERFAMILY HMA, heavy metal-associated domain 170 239 IPR036163 GO:0046872
Vian9g01291 981 SUPERFAMILY HAD-like 651 966 IPR036412 -
Vian9g01291 981 ProSitePatterns E1-E2 ATPases phosphorylation site. 655 661 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01291 Vian-Chr9 27641804 27648676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01291 28 979 Primary Pumps ATPases AT1G63440 54.906 0.0 1029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01291 K17686 - gmx:100793894 1658.66