Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01288 ATGGAAAGATATAAAATTTTGAGAGAGCTCGGGGATGGTTCTTGCGGTCATGTATATAAAGCCCATGATATGCGAACATATGAGATTGTTGCTGTCAAAAAGTTGAAAAGAAAGTTTTGTTTCTGGGAAGAATACACAAATTTAAGAGAAGTTAAGGCCCTCCGTAAAATGAATCACCCAAATATCATAAAGTTGAAAGAGGTTGTTAGAGAAAATAATGAACTATTTTTCATTTTTGAATACATGGATTGTAATCTTTATCAATTAATAAAGGAGAGAGAAAAACCCTTTTCAGAGGAAGAGATACGGTGCTTTGTGAGGCAAATGTTGGAAGGACTTAGTCATATGCACAAGAAAGGATTCTTTCATCGGGATTTAAAACCTGAGAATTTGCTGGTAACAAATGATGTTTTGAAAATTGCTGATTTTGGACTGGCTAGAGAAGTATCATCAATGCCTCCATATACTCAATATGTTTCCACACGGTGGTATCGAGCTCCAGAAGTTTTGATGCAAGCCCCTTCTTATACTCCTGCTGTTGACATGTGGGCAGTTGGTGCTATATTAGCTGAGCTTTTTACTTTGACCCCTTTATTTCCTGGTGAAAGTGAAATAGATCAACTGTACAAAATATATGGCATTCTTGGGATGCCAGATTCCTCTGCTTTCACCATCAGGGAAAACAACTCTCAATTATTGGATTTGGTTTCTCATGAAATTGTTCCACCTGTGAAACTTTCTAACATCATTCCAAATGCTAGTTCGGAAGCTGTAGACTTGATGACAGTGAATGCATGGGTTCCTTATCCACTCAGTGATCCACTTGAGCTGAAGCTGAGTAGCAAGAGGGCAAAGCCAAATCTCGAGCTGAAACTGCAGGATTTTGGCCCCGATCCCGATGATTGTTTTCTTGGCTTGACCTTAGCTGTAAAGCCCAGTGTTTCAAACATAGATGTGGTCCAAAATGTATCGCAGGGTGTAAGAGAGAACATGCTATTTTGCTCAGATTTTAATGATCATTCGGACCAGTCAGTATTCTGGACATTATTATCTCCTGATCGAAATGGTGTTGCTAACTCAGCAGAGACTTCACTGTCACTGTCATTCAGTTCAATGCAACATCAGCCAATTGGAGTTCCACAGTCTACGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACTACACCATTTTTGGCACTGTCTTCTCCCTTCCAGCGCGGCCACTGCCTTTGA 1239 0.3987 MERYKILRELGDGSCGHVYKAHDMRTYEIVAVKKLKRKFCFWEEYTNLREVKALRKMNHPNIIKLKEVVRENNELFFIFEYMDCNLYQLIKEREKPFSEEEIRCFVRQMLEGLSHMHKKGFFHRDLKPENLLVTNDVLKIADFGLAREVSSMPPYTQYVSTRWYRAPEVLMQAPSYTPAVDMWAVGAILAELFTLTPLFPGESEIDQLYKIYGILGMPDSSAFTIRENNSQLLDLVSHEIVPPVKLSNIIPNASSEAVDLMTVNAWVPYPLSDPLELKLSSKRAKPNLELKLQDFGPDPDDCFLGLTLAVKPSVSNIDVVQNVSQGVRENMLFCSDFNDHSDQSVFWTLLSPDRNGVANSAETSLSLSFSSMQHQPIGVPQSTGFSFQPLQPNILTTPFLALSSPFQRGHCL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01288 412 FunFam Mitogen-activated protein kinase 82 293 - -
Vian9g01288 412 Pfam Protein kinase domain 4 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01288 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vian9g01288 412 CDD STKc_MAK_like 4 262 - -
Vian9g01288 412 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 3 261 - -
Vian9g01288 412 Gene3D Transferase(Phosphotransferase) domain 1 82 262 - -
Vian9g01288 412 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01288 412 ProSiteProfiles Protein kinase domain profile. 4 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01288 412 FunFam Serine/threonine-protein kinase MHK 1 83 - -
Vian9g01288 412 Gene3D Phosphorylase Kinase; domain 1 2 81 - -
Vian9g01288 412 SUPERFAMILY Protein kinase-like (PK-like) 1 262 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01288 Vian-Chr9 27589835 27595777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01288 7 261 MAP Kinase Gene Family AT4G01370 39.695 1.61e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Vian9g01288 Pkinase 1.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01288 K08829 K08830 gmx:100792842 754.977