Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01287 ATGATAGAGATATGTGGAGAGGAAGGATCAGGTAAAACCACTCTTGCCAAAGCCATCTACAATCAAATTAATTGGACATTCAAGGAGAAAATTTTCATTGAAAGTGTTTCAACAGTTTGCGGAATAAGACAAGATCTTCGTTTACTAGAAAAACTTCTTTTAGATGTCCTAAAACAAAAGGTGGAGATTCCTAGCATTGATGTGGGAAGAAGTATGATTCGGGAAAGACTTTCTGGGAAAAGGATGCTCATTGTACTTGACAATGTTTCTAACTTTAGTTTATTAGACAGATTGGATTGTCATAAATGGTTCGTTGAAGGAACTGTTATAATCCTTACATCAACATATAAAGAACCGCTGAGAGAAGGTAATTCTGTCTTTTGGGTAGAGCAAATGAACGAAAAGGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAACCAAAACCAAAAGAAGAATACAAAGACCTTGCAAGAAGAGTAGTTAGTTATTGTGAAGGACTACCACTAGCTCTTGAAGTCGTTGGAAGTACTTTATTTAAAAAGACGAAAGAAGAATGGCACAGTTTATTGTTTAAATTTGCGATAGTTGGCATGTTTCATGTTCCAGAGATAATAAAAGTAAGCATCGAAAGTTCACTGAATGAAATGGAAAAAGATATATTCCTTGATGTATGTTGTTTCTTTGTTGGTAAGAGCAGAACCTATGTAAGGAAGATCCTAAATGGCTGTGGAGTAGACGCTGATATTGGAATAAGAGTTCTCATGGAGCGTAACCTCATCAAAATTAACAAGAACAACAAATTTGGAATGCATCCTTTGCTACAAGAAATCGGAATAAGAATTATTCGTGAAAATTCAGGAAAGGATCTTGGGAAGAACAGGCGACTGTTGTTTGATAATGATGCAAATTATGGGACAGAAGCCCTGCAGTGGTTGCCTGTGAAACTGCCTTCACTCAGTTGTGTACAAGCGACTGTAAATTCTGAGTACCTTCTTAAGAAACTAAGATGGATCAGTTCGTATGGGCTTTCTTCAGAATATCTACCAAAGAACTTTTATTGGGATGATGCAACAGCGATTGATTTAAAACGCAGTCTTCTTCGATTTCTCTGGAAAACACCCCAGGTTTTGAGATCGCTAAAAGTCCTTAACCTCAGTCATTCCAAGTATTTAACTATAACCCCTGACTTTACCGGATTACCAAGTCTTGAACACCTCATTTTCAAATATTGTTCAAGATTGCTCAAAGTACACCGATCTATTGGATCACTCAACAGTCTTATACTGCTAAATTTGAAAGACTGTACAAGTCTAAACAATCTTCCAAAAGAGATATATGAGTTGAAATCTTTAAGAACTCTCATTCTCTCTGGTTGTTCGGAGATTCACATAATGGATAAAGATATAGCAAAGTTGAAATCCTTGATAACTGTAATTGCTGAAAATACAGCTGTCAAACATGTGCCTTTTTCAATTCTAAGCTCAAAAGGCATTGGGTATATGTCCCTACGAAGATTTGAGGGATTATCTCATAATCTTTTTCCTTCTATCATTCGGTCTTGGATGTCACCAACAATGAATCCCATTTCTTATATTCATTCGTTTTGCATGGATATGATGGATAATACGATTGATATTGCACCATTGCTTAGCACCCTTGCAAATGTTCGAAGTGTTTTGTTAGCATGTGACACCGAATTTCAATTATCTAAGGAAGTGACAAATATTTTGGTTGAATATTTTACGAATATTACAGAATCAGGAATTTCAAAGAAGCACTTCAGGTGTTCTTTGAATGGTGTTGGAGCATACCATCAATTCTTCAATGCTGTCAGCGATAACATATATGAGGTATTGGCAAGCAGTGAGTGTGGTGATGTTTGTCTCCCAGCTGTGAATGATCCTTATTGTTTGGCCCATATGGGTGAGGGACACTCTGTATCTTTCATTGTGCCTCAAGATCGTGACATGAAAGGAATGATTTTGGGTGTTGTTTATTTATCAACTCCTAAGATCATTGAACCTGAATTTACTATAGTCGTCATTGTTAATTACACAAAGTGTACATTTCACATATACAAACATGGCACAGTAATTTTCTTTAATGAAGAAGATTGGCATGGCATAATGTCAAATTTAGAATCTGGAGACAATGTGGAGATTTTTGTGAATTTCGGTAATGGATTGGTGGTCAAGAACACAATGGTGTATCTGATATGTGGTGAATCAAAGAACATGGAAAAAGCGTCTGAGTCAAAGAAACATTCTCTCATTAGATTCATAAAAAAAGTTGTAATGTGA 2307 0.3624 MIEICGEEGSGKTTLAKAIYNQINWTFKEKIFIESVSTVCGIRQDLRLLEKLLLDVLKQKVEIPSIDVGRSMIRERLSGKRMLIVLDNVSNFSLLDRLDCHKWFVEGTVIILTSTYKEPLREGNSVFWVEQMNEKESLELLSWHAFREPKPKEEYKDLARRVVSYCEGLPLALEVVGSTLFKKTKEEWHSLLFKFAIVGMFHVPEIIKVSIESSLNEMEKDIFLDVCCFFVGKSRTYVRKILNGCGVDADIGIRVLMERNLIKINKNNKFGMHPLLQEIGIRIIRENSGKDLGKNRRLLFDNDANYGTEALQWLPVKLPSLSCVQATVNSEYLLKKLRWISSYGLSSEYLPKNFYWDDATAIDLKRSLLRFLWKTPQVLRSLKVLNLSHSKYLTITPDFTGLPSLEHLIFKYCSRLLKVHRSIGSLNSLILLNLKDCTSLNNLPKEIYELKSLRTLILSGCSEIHIMDKDIAKLKSLITVIAENTAVKHVPFSILSSKGIGYMSLRRFEGLSHNLFPSIIRSWMSPTMNPISYIHSFCMDMMDNTIDIAPLLSTLANVRSVLLACDTEFQLSKEVTNILVEYFTNITESGISKKHFRCSLNGVGAYHQFFNAVSDNIYEVLASSECGDVCLPAVNDPYCLAHMGEGHSVSFIVPQDRDMKGMILGVVYLSTPKIIEPEFTIVVIVNYTKCTFHIYKHGTVIFFNEEDWHGIMSNLESGDNVEIFVNFGNGLVVKNTMVYLICGESKNMEKASESKKHSLIRFIKKVVM 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01287 768 Pfam NB-ARC domain 2 195 IPR002182 GO:0043531
Vian9g01287 768 Gene3D - 131 213 IPR042197 -
Vian9g01287 768 SUPERFAMILY "Winged helix" DNA-binding domain 203 288 IPR036390 -
Vian9g01287 768 PRINTS Disease resistance protein signature 166 180 - -
Vian9g01287 768 PRINTS Disease resistance protein signature 76 90 - -
Vian9g01287 768 PRINTS Disease resistance protein signature 1 16 - -
Vian9g01287 768 PRINTS Disease resistance protein signature 448 464 - -
Vian9g01287 768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 225 IPR027417 -
Vian9g01287 768 Gene3D Ribonuclease Inhibitor 264 628 IPR032675 -
Vian9g01287 768 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 479 IPR044974 GO:0006952
Vian9g01287 768 Gene3D - 1 125 IPR027417 -
Vian9g01287 768 SUPERFAMILY L domain-like 324 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01287 Vian-Chr9 27559914 27582096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01287 2 494 WRKY Transcription Factor Family AT4G12020 29.282 1.17e-43 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01287 - - var:108346736 1078.54