Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01235 ATGGACTTGAGGGACGCAAAAGTTGGCTTCTTTCTGTTTTGTAGTTTCTGTCTTGTCACTTTCTCTGAACAAGATGGTTTCTTTAGTCTTTCTTGTGGTGGAAGAACCAGTTTCAGGGATTCATCTAACATTTCGTGGGTACCAGACACCACCTACGTAACCACAGGAAAGACTACTACCATCACATACAGTGATGGTTCCAACTCACTGAACATCTCAGCTCGGTTCTTCCCAAATTCTAGAAGGCGAAAATGTTACAGAATACCAGTGAACAATTCAACTACTTTGGTTCTTGTTAGAGCAAAATTTGTGTACAAGAACTATGATGGACTTGGGAAACCCCCTAAGTTCTATGTTTCAATTGGGACATCTATTGCAGCCGCCATAAATCTTGCTGAAGATGATCCATGGAGTGAAGAGTTTTTATGGACAGTCAACATGGATACACTGTCATTCTGCTTAATTGCAATGCCTGAAGGGGCTTCACCTGTAATTTCTTCTCTTGAAATCAGACCACTTCCTCAGGGAGCCTACACAAATGGTATGACAGATTTTCCTAACAAGTTGCTTAAGAAGAGTTATAGAATTGATTGTGGGCACTCAAAGGATTCCATAAGGTATCCTTTGGATCCATTTGATAGAATATGGGATGCTGATAGAAGTTTCACACCCTTTCATGTTGCCATTGGGTTTAAGATTCAACTTAGCTTCAGACAGTCTAGTCTTGTAGAAGAACCACCAGTTGTTGTTCTTCAAACTGGGAGAGTTTTGGCAAGAAGTAATACTCTGACATACAACCTCCCTCTTGATGCATTAGGGGACTACTACATCATCCTCTACTTTGCAGGGATTCTTCCTGTCTTCCCCTCATTTGATGTTCTTATAAATGGAGAACTAGTAAAATCAAACTACAAAATAAATGGCTCTGAAACCAGTGCTTTATACATAACGCGAAAGGGAATTGGGAGCTTGAATATAACATTAAAGAGTATCAGCTTTTATCCTCAGATCAATGCATTTGAGGTTTATAAGATGGTTGATATTCCAAATGATGCCTCATCAACCACAGCACTGCAGGTTATTCAGCAGTCCACTGGATTGGATCTTGGATGGCAGGATGATCCATGTCTGCCTTCCCCATGGGAGAAAATTCACTGTGAAGGAAGCCTTGTTACATCATTGGATCTTTCAGACATAAATTTGAGATCCATTAGTCCTACATTTGGTGACTTGTTAGACCTCAAAATATTGGATTTGCACAACACATCACTTACTGGTGAAATACAGAATTTGGATGGCTTGCAGCATCTTGAGAAACTAGACTTGCAGAACAATAGTTTAATGGGAACAGTACCTGATAGCTTGGGAGAGTTAGAGGACCTCCACTTACTGACATCTGGTAATTTGTGTCTTACCTTTTCCACAACATCATGTGATGATGATGCATCATCATCCAATCCTCCAATTGAAGCACCACAAGTTACTGTAGTTCCTCAGAAGAAGCACAATGTACATAACAATCTAGCAATCATACTAGCCACGGTTGGAGGAGCCATAATAGCCTTTCTCTTAATGTGTATTTCAGTATTGATATACAAGACCAAACAACACTATGAAGCCTCCCACACATCAAGAGGAGAAATGGATACGAGGAACTGGGGTGCTGCAAAAGTATTTTCCTACAAAGAAATCAAAGTATCTACAAGAAACTTCAAGGAAATCATAGGAAAGGGTAGTTTTGGATCTGTTTATCTTGGTAAACTTCCAGAAGGAAAATCTGTAGCTGTCAAAGTTCGTTTTGACAGATCTCAACTGGGTGCTGATTCATTCATCAATGAGGTTAATCTTTTATCAAAAATCCGGCATCAAAATCTTGTGTCTTTGGAAGGATTTTGTCATGAAAGAAAGCATCAGATATTGGTTTATGAGTACTTGCCTGGGGGATCCCTGGCTGATCATCTCTATGGTTGTCAAAAAATTTCCTTAAGCTGGGTGAGAAGGCTGAAAATTGCTGTTGATGCAGCAAAAGCTCATTTTAATTCCGGACCTCATGAAAACACCATTCTAGTGTACTTCATTTTCAAAAATGTCACTGATGCCAAACCATACTTGCAGGCTGGTGCATATGAGATAGTGGATGAAGACATAAGAGGAAGTTTTGATCCCTTGAGTATGAAGAAAGCAGCTTTCATTGCTATAGAGTCAGTGCACAGGGATGCATCACAGAGGCCATCTATTGCAGAGGTATTGACAGAGCTAAAGGAAGCCTACGATATTCAGCTCAGATTCCTTGAATCATGTGAAAATGAGAATTGA 2316 0.399 MDLRDAKVGFFLFCSFCLVTFSEQDGFFSLSCGGRTSFRDSSNISWVPDTTYVTTGKTTTITYSDGSNSLNISARFFPNSRRRKCYRIPVNNSTTLVLVRAKFVYKNYDGLGKPPKFYVSIGTSIAAAINLAEDDPWSEEFLWTVNMDTLSFCLIAMPEGASPVISSLEIRPLPQGAYTNGMTDFPNKLLKKSYRIDCGHSKDSIRYPLDPFDRIWDADRSFTPFHVAIGFKIQLSFRQSSLVEEPPVVVLQTGRVLARSNTLTYNLPLDALGDYYIILYFAGILPVFPSFDVLINGELVKSNYKINGSETSALYITRKGIGSLNITLKSISFYPQINAFEVYKMVDIPNDASSTTALQVIQQSTGLDLGWQDDPCLPSPWEKIHCEGSLVTSLDLSDINLRSISPTFGDLLDLKILDLHNTSLTGEIQNLDGLQHLEKLDLQNNSLMGTVPDSLGELEDLHLLTSGNLCLTFSTTSCDDDASSSNPPIEAPQVTVVPQKKHNVHNNLAIILATVGGAIIAFLLMCISVLIYKTKQHYEASHTSRGEMDTRNWGAAKVFSYKEIKVSTRNFKEIIGKGSFGSVYLGKLPEGKSVAVKVRFDRSQLGADSFINEVNLLSKIRHQNLVSLEGFCHERKHQILVYEYLPGGSLADHLYGCQKISLSWVRRLKIAVDAAKAHFNSGPHENTILVYFIFKNVTDAKPYLQAGAYEIVDEDIRGSFDPLSMKKAAFIAIESVHRDASQRPSIAEVLTELKEAYDIQLRFLESCENEN 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01235 771 Gene3D Transferase(Phosphotransferase) domain 1 551 678 - -
Vian9g01235 771 FunFam serine/threonine-protein kinase PBS1-like 536 644 - -
Vian9g01235 771 SUPERFAMILY Protein kinase-like (PK-like) 545 677 IPR011009 -
Vian9g01235 771 PANTHER OS07G0107800 PROTEIN-RELATED 28 676 - -
Vian9g01235 771 ProSiteProfiles Protein kinase domain profile. 569 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01235 771 SUPERFAMILY L domain-like 361 472 - -
Vian9g01235 771 Gene3D Ribonuclease Inhibitor 354 469 IPR032675 -
Vian9g01235 771 Gene3D - 191 346 - -
Vian9g01235 771 ProSitePatterns Protein kinases ATP-binding region signature. 575 597 IPR017441 GO:0005524
Vian9g01235 771 Pfam Malectin-like domain 30 345 IPR024788 -
Vian9g01235 771 Pfam Protein tyrosine and serine/threonine kinase 571 677 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01235 Vian-Chr9 26147583 26154547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01235 694 766 Receptor kinase-like Gene Family AT5G48740 64.384 1.25e-19 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vian9g01235 Malectin_like 1.3e-53 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01235 - - vum:124845082 1305.04