LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian9g01219	ATGGCCAACCTCAAAATGCTCCTCGTACTCTTGTCTTTGTTGCTGTTCCTTCTGATCCCAGTTTCTTCTCAGCCTAACCAGATCTTCTATGCTGGATTCAAGGGTTTGGATAGCAGCAACATGACCCTTGATGGTGTAGCAGAAATTGAGCCAAGTGGGGTACTGAAACTCACAAATGATTCAAGTAAAGTAATGGGTCATGCTTTTTATCCAACTGCTCTTCAGTTCAAGAACTCAAGTGATGGTAAAGCTTTCTCCTTTTCTTCCTCTTTTGCTTTGGCTATTGTTCCTGAGTTTCCAAAGCTTGGAGGGCATGGCCTTGCTTTTACAATTGCAACTTCCAAGGATCTGAAGGCTCTTCCAAGCCAGTATCTTGGTCTTCTTAACTCAAGTAGCATAGGGAACTTCTCCAACCACCTTTTTGCTGTCGAGTTTGACACAGCCCAAGATTTTGAGTTTGTGGACATCAATGATAACCATGTTGGAATTGACATCAATAGCTTGGTATCCAATGCTTCTGCTCCTGCTGGGTTCTACGCCGGGGATCATGATTCAGACAAACAGAATCTGACTCTCAAAAGTGGGCAACCTATTCTGGTTTGGGTTGATTATGATTCTGCTCAAAGTGTTGTTAATGTCACAATTTCTGCATCTTCTACCAAACCCAGAAGATCACTCTTGTCTTTTCCTGTGGATCTTTCACCAATCCTTAGGGATTCCATGTATGTAGGGTTCTCTGCATCCACAGGGTTGCTTGCTAGCTCCCATTACATTTTGGGTTGGAGCTTCAAAATCAATGGACCAGCAACACCCCTTGATCTCTCTTCCCTCCCACAGCTTCCAGGGCCAAAGAGGAAACACACATCTCTGATAATTGGGGTTTCAGTGTCTGGAGCTGTTCTTGCATTGTTTGCTGTCTTACTCGGCTTCTACATGTACAGAAGGTACAAGAATGCCGATGTTATAGAAGCTTGGGAGCTTGAGATTGGACCACACAGGTACTCCTACCAAGAGCTCAAGAAAGCAACAAAAGGTTTCAAGGACAAAGAGCTGCTTGGACAAGGTGGATTTGGGAGTGTCTACAAGGGAACATTACCAAATTCCAACACCCAAGTTGCTGTCAAGAGAATCTCACATGACTCAAAACAAGGCCTGAGGGAATTTGTGTCAGAAATAGCCAGCATAGGCAGGCTTCGCCACCGGAATCTGGTTCAGCTTCTGGGGTGGTGTCGCCGGCGCGGTGACCTCCTCCTTGTGTATGATTTCATGGCTAATGGGAGCTTAGACAAGTACCTGTTTGATGAACCAGAAATAATCCTTAGTTGGGAGCAAAGGTTTAAGGTGGTGAAGGATGTTGCTTCTGCCCTTTTGTATCTGCATGAGGGCTATGAGCAGGTGGTGATACACAGAGATGTGAAGGCTAGCAATGTGCTGCTAGATGGAGAACTCAATGGAAGACTAGGAGATTTTGGATTAGCAAGGTTGTATGAACATGGTGCTAACCCAAGTACCACAAGGGTAGTGGGGACATTAGGGTATTTGGCACCTGAGGTGCCTAGGACAGGGAAGGCCACACCTAGCTCAGATGTTTTTGCATTTGGTGCACTTTTACTTGAGGTGGCATGTGGGCTGAGGCCACTTGACCCAAAGGCAATGCCAGAAGATTTGGTTTTGGTTGATTGTGTGTGGAACAAGTACAAGCAAGGGAGAATACTTGATGTGGTGGACCCTAGACTGAATGGTGCTTTTAATGAAAGAGAGGTACTGATGGTGTTGAAATTGGGGCTTCTATGTTCAAATGGTTCTCCCACTGCTAGGCCTAGCATGAGACAGGTGGTGAGGTTCTTGGAGGGAGAAGTTGGTGTGCCAGATGAGTTGAGAAGGCAAGGAGAGACAGATTCTCAGGAGGGTTTTGATGAGTTCTTGCACTTACTTGACTCTTCTTCTTTTCATCAGATGAGCAGAAGCACTTATGGTGGTACTTCTCCTTCTTTTACTGATACATCACTCTTTACTCCCACTGCTAAAGGAGAAACAATGTGA	2043	0.4533	MANLKMLLVLLSLLLFLLIPVSSQPNQIFYAGFKGLDSSNMTLDGVAEIEPSGVLKLTNDSSKVMGHAFYPTALQFKNSSDGKAFSFSSSFALAIVPEFPKLGGHGLAFTIATSKDLKALPSQYLGLLNSSSIGNFSNHLFAVEFDTAQDFEFVDINDNHVGIDINSLVSNASAPAGFYAGDHDSDKQNLTLKSGQPILVWVDYDSAQSVVNVTISASSTKPRRSLLSFPVDLSPILRDSMYVGFSASTGLLASSHYILGWSFKINGPATPLDLSSLPQLPGPKRKHTSLIIGVSVSGAVLALFAVLLGFYMYRRYKNADVIEAWELEIGPHRYSYQELKKATKGFKDKELLGQGGFGSVYKGTLPNSNTQVAVKRISHDSKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPEIILSWEQRFKVVKDVASALLYLHEGYEQVVIHRDVKASNVLLDGELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPEVPRTGKATPSSDVFAFGALLLEVACGLRPLDPKAMPEDLVLVDCVWNKYKQGRILDVVDPRLNGAFNEREVLMVLKLGLLCSNGSPTARPSMRQVVRFLEGEVGVPDELRRQGETDSQEGFDEFLHLLDSSSFHQMSRSTYGGTSPSFTDTSLFTPTAKGETM	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian9g01219	680	CDD	lectin_legume_LecRK_Arcelin_ConA	30	267	IPR001220	GO:0030246
	Vian9g01219	680	Pfam	Protein kinase domain	346	549	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian9g01219	680	FunFam	Lectin-domain containing receptor kinase A4.3	331	422	-	-
	Vian9g01219	680	ProSiteProfiles	Protein kinase domain profile.	346	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian9g01219	680	SMART	serkin_6	346	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vian9g01219	680	Gene3D	Phosphorylase Kinase; domain 1	331	422	-	-
	Vian9g01219	680	FunFam	L-type lectin-domain containing receptor kinase S.4	423	629	-	-
	Vian9g01219	680	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	467	479	IPR008271	GO:0004672\|GO:0006468
	Vian9g01219	680	SUPERFAMILY	Protein kinase-like (PK-like)	328	624	IPR011009	-
	Vian9g01219	680	ProSitePatterns	Protein kinases ATP-binding region signature.	352	375	IPR017441	GO:0005524
	Vian9g01219	680	FunFam	L-type lectin-domain containing receptor kinase S.4	24	271	-	-
	Vian9g01219	680	PANTHER	-	18	623	-	-
	Vian9g01219	680	Gene3D	Transferase(Phosphotransferase) domain 1	423	631	-	-
	Vian9g01219	680	Gene3D	-	27	266	-	-
	Vian9g01219	680	MobiDBLite	consensus disorder prediction	653	680	-	-
	Vian9g01219	680	Pfam	Legume lectin domain	29	277	IPR001220	GO:0030246
	Vian9g01219	680	SUPERFAMILY	Concanavalin A-like lectins/glucanases	33	285	IPR013320	-
	Vian9g01219	680	CDD	STKc_IRAK	352	618	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian9g01219	Vian-Chr9	25618787	25620829	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian9g01219	21	679	Receptor kinase-like Gene Family	AT3G55550	58.136	0.0	764

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vian9g01219		Pkinase	1.9e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian9g01219	-		-	gmx:100801247	1149.04