Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01219 ATGGCCAACCTCAAAATGCTCCTCGTACTCTTGTCTTTGTTGCTGTTCCTTCTGATCCCAGTTTCTTCTCAGCCTAACCAGATCTTCTATGCTGGATTCAAGGGTTTGGATAGCAGCAACATGACCCTTGATGGTGTAGCAGAAATTGAGCCAAGTGGGGTACTGAAACTCACAAATGATTCAAGTAAAGTAATGGGTCATGCTTTTTATCCAACTGCTCTTCAGTTCAAGAACTCAAGTGATGGTAAAGCTTTCTCCTTTTCTTCCTCTTTTGCTTTGGCTATTGTTCCTGAGTTTCCAAAGCTTGGAGGGCATGGCCTTGCTTTTACAATTGCAACTTCCAAGGATCTGAAGGCTCTTCCAAGCCAGTATCTTGGTCTTCTTAACTCAAGTAGCATAGGGAACTTCTCCAACCACCTTTTTGCTGTCGAGTTTGACACAGCCCAAGATTTTGAGTTTGTGGACATCAATGATAACCATGTTGGAATTGACATCAATAGCTTGGTATCCAATGCTTCTGCTCCTGCTGGGTTCTACGCCGGGGATCATGATTCAGACAAACAGAATCTGACTCTCAAAAGTGGGCAACCTATTCTGGTTTGGGTTGATTATGATTCTGCTCAAAGTGTTGTTAATGTCACAATTTCTGCATCTTCTACCAAACCCAGAAGATCACTCTTGTCTTTTCCTGTGGATCTTTCACCAATCCTTAGGGATTCCATGTATGTAGGGTTCTCTGCATCCACAGGGTTGCTTGCTAGCTCCCATTACATTTTGGGTTGGAGCTTCAAAATCAATGGACCAGCAACACCCCTTGATCTCTCTTCCCTCCCACAGCTTCCAGGGCCAAAGAGGAAACACACATCTCTGATAATTGGGGTTTCAGTGTCTGGAGCTGTTCTTGCATTGTTTGCTGTCTTACTCGGCTTCTACATGTACAGAAGGTACAAGAATGCCGATGTTATAGAAGCTTGGGAGCTTGAGATTGGACCACACAGGTACTCCTACCAAGAGCTCAAGAAAGCAACAAAAGGTTTCAAGGACAAAGAGCTGCTTGGACAAGGTGGATTTGGGAGTGTCTACAAGGGAACATTACCAAATTCCAACACCCAAGTTGCTGTCAAGAGAATCTCACATGACTCAAAACAAGGCCTGAGGGAATTTGTGTCAGAAATAGCCAGCATAGGCAGGCTTCGCCACCGGAATCTGGTTCAGCTTCTGGGGTGGTGTCGCCGGCGCGGTGACCTCCTCCTTGTGTATGATTTCATGGCTAATGGGAGCTTAGACAAGTACCTGTTTGATGAACCAGAAATAATCCTTAGTTGGGAGCAAAGGTTTAAGGTGGTGAAGGATGTTGCTTCTGCCCTTTTGTATCTGCATGAGGGCTATGAGCAGGTGGTGATACACAGAGATGTGAAGGCTAGCAATGTGCTGCTAGATGGAGAACTCAATGGAAGACTAGGAGATTTTGGATTAGCAAGGTTGTATGAACATGGTGCTAACCCAAGTACCACAAGGGTAGTGGGGACATTAGGGTATTTGGCACCTGAGGTGCCTAGGACAGGGAAGGCCACACCTAGCTCAGATGTTTTTGCATTTGGTGCACTTTTACTTGAGGTGGCATGTGGGCTGAGGCCACTTGACCCAAAGGCAATGCCAGAAGATTTGGTTTTGGTTGATTGTGTGTGGAACAAGTACAAGCAAGGGAGAATACTTGATGTGGTGGACCCTAGACTGAATGGTGCTTTTAATGAAAGAGAGGTACTGATGGTGTTGAAATTGGGGCTTCTATGTTCAAATGGTTCTCCCACTGCTAGGCCTAGCATGAGACAGGTGGTGAGGTTCTTGGAGGGAGAAGTTGGTGTGCCAGATGAGTTGAGAAGGCAAGGAGAGACAGATTCTCAGGAGGGTTTTGATGAGTTCTTGCACTTACTTGACTCTTCTTCTTTTCATCAGATGAGCAGAAGCACTTATGGTGGTACTTCTCCTTCTTTTACTGATACATCACTCTTTACTCCCACTGCTAAAGGAGAAACAATGTGA 2043 0.4533 MANLKMLLVLLSLLLFLLIPVSSQPNQIFYAGFKGLDSSNMTLDGVAEIEPSGVLKLTNDSSKVMGHAFYPTALQFKNSSDGKAFSFSSSFALAIVPEFPKLGGHGLAFTIATSKDLKALPSQYLGLLNSSSIGNFSNHLFAVEFDTAQDFEFVDINDNHVGIDINSLVSNASAPAGFYAGDHDSDKQNLTLKSGQPILVWVDYDSAQSVVNVTISASSTKPRRSLLSFPVDLSPILRDSMYVGFSASTGLLASSHYILGWSFKINGPATPLDLSSLPQLPGPKRKHTSLIIGVSVSGAVLALFAVLLGFYMYRRYKNADVIEAWELEIGPHRYSYQELKKATKGFKDKELLGQGGFGSVYKGTLPNSNTQVAVKRISHDSKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPEIILSWEQRFKVVKDVASALLYLHEGYEQVVIHRDVKASNVLLDGELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPEVPRTGKATPSSDVFAFGALLLEVACGLRPLDPKAMPEDLVLVDCVWNKYKQGRILDVVDPRLNGAFNEREVLMVLKLGLLCSNGSPTARPSMRQVVRFLEGEVGVPDELRRQGETDSQEGFDEFLHLLDSSSFHQMSRSTYGGTSPSFTDTSLFTPTAKGETM 680
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01219 680 CDD lectin_legume_LecRK_Arcelin_ConA 30 267 IPR001220 GO:0030246
Vian9g01219 680 Pfam Protein kinase domain 346 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01219 680 FunFam Lectin-domain containing receptor kinase A4.3 331 422 - -
Vian9g01219 680 ProSiteProfiles Protein kinase domain profile. 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01219 680 SMART serkin_6 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01219 680 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Vian9g01219 680 FunFam L-type lectin-domain containing receptor kinase S.4 423 629 - -
Vian9g01219 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Vian9g01219 680 SUPERFAMILY Protein kinase-like (PK-like) 328 624 IPR011009 -
Vian9g01219 680 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Vian9g01219 680 FunFam L-type lectin-domain containing receptor kinase S.4 24 271 - -
Vian9g01219 680 PANTHER - 18 623 - -
Vian9g01219 680 Gene3D Transferase(Phosphotransferase) domain 1 423 631 - -
Vian9g01219 680 Gene3D - 27 266 - -
Vian9g01219 680 MobiDBLite consensus disorder prediction 653 680 - -
Vian9g01219 680 Pfam Legume lectin domain 29 277 IPR001220 GO:0030246
Vian9g01219 680 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 285 IPR013320 -
Vian9g01219 680 CDD STKc_IRAK 352 618 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vian9g01219 Vian-Chr9 25618787 25620829 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01219 21 679 Receptor kinase-like Gene Family AT3G55550 58.136 0.0 764
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian9g01219 Pkinase 1.9e-44 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01219 - - gmx:100801247 1149.04