Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01209 ATGGTTTTTACTTCCATCCCAGCTTCTTATTTTGATGCATCCAATTGGCAGCAACAGCAACCAAATAACCAACCCGGAGGCAGTGACTCCAACTCTCAGCAGCTGCTTCAACCACCACCGCCACCACTTCCGGTTGCAATGCAGTCTCATGGAGAGGGTTCAATCAGGCCAGGATCCATGGCTGATAGGGCAAGGATGGCCAACATGCCAATGCCAGAGGTTGCACTCAAGTGTCCACGCTGCGAATCCACCAACACCAAATTTTGCTACTTCAACAACTACAGTCTCTCCCAGCCCCGCCACTTCTGCAAGACCTGCAGGAGGTACTGGACCAGAGGCGGCGCCTTAAGGAGTGTCCCCGTGGGCGGAGGCTTCAGGAGGAACAAGCGGAGCAAAGGTACCGGCGGCAGTGGCGGCGGCTCCAACTCTCCGGCAACCTCTGACCGCCAGACAGGAAGTGCCAATTCTACCAACTCGGGATCTTCGAAGAGTGAGAGAATAGGGCTTGCACCCCAAATTCCACCCTTCAGATTCATGCCTCCATTGCATCAACTTGGTGACTTTGGAGATGGAGACATAAGCCTAAACTATGGCCTCAGTTATGGCCCAGTGGGAGGAGTAGGAGACTTGGGTTATCAAATTGGAACAAGTGCTTTAGGTGGTGGTGCCACTTCAATCTTCTCTGCACCTGGTTTGGACCAATGGAGAATGCCACAGCAGTTTCCCCTCTTGGCCTCCTTGGAAGGTTCATCACCAGCTTCTAATTTATACCCTTTTGAAGGTAGTGCTGAGATGAGTGGATATATAAGGCCAAAGGTTTCAACTTCTGGGATCATGGCTCAGATAGCTTCGGTGAAAATGGAAGAACGTAAGGAACCTGATTTGTCAACACTTTTCTTGGGAAACGATAATCCAGTGAATGAACAATATTGGACCAGTGCTAGTTCTGCATCTTGGACAGATATTTGTGGGATTAGCTCCTCTTTCACTGCAAGCAACCATCTATAG 1008 0.502 MVFTSIPASYFDASNWQQQQPNNQPGGSDSNSQQLLQPPPPPLPVAMQSHGEGSIRPGSMADRARMANMPMPEVALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGFRRNKRSKGTGGSGGGSNSPATSDRQTGSANSTNSGSSKSERIGLAPQIPPFRFMPPLHQLGDFGDGDISLNYGLSYGPVGGVGDLGYQIGTSALGGGATSIFSAPGLDQWRMPQQFPLLASLEGSSPASNLYPFEGSAEMSGYIRPKVSTSGIMAQIASVKMEERKEPDLSTLFLGNDNPVNEQYWTSASSASWTDICGISSSFTASNHL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01209 335 MobiDBLite consensus disorder prediction 13 59 - -
Vian9g01209 335 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
Vian9g01209 335 MobiDBLite consensus disorder prediction 120 167 - -
Vian9g01209 335 MobiDBLite consensus disorder prediction 13 34 - -
Vian9g01209 335 MobiDBLite consensus disorder prediction 134 166 - -
Vian9g01209 335 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Vian9g01209 335 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Vian9g01209 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 162 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01209 Vian-Chr9 25469042 25470430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01209 44 320 C2C2-Dof Transcription Factor Family AT3G55370 42.333 9.75e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vian9g01209 zf-Dof 1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01209 - - pvu:PHAVU_010G013500g 536.569