Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01206 ATGGGACGCCGGAAAACGATGACGATGGACTGGGACGGCCTTGGCGATGTTGACGACGATGATGCCTTCTTCGAGTCATACAGCCGCCTCTCCACCGCCGCCCCCCTCGACCTGGCCTCCTCCGACGACGATGACGACGACGATTTCGACGACCCCCGCCTTTCCTTCGCCTCAGCCATCTCCTCCGCTCCCTCGCGTCGAAACAGCCTTTCTCCCACGATGGATGCTGCTCAAGATTACGGCGTATGGATGGCGGCCCCCGTCTCAATTGACGAGCGCCGAAAGCGTTTGCTCCACGGCATGGGTCTGGACGACGACAAAGAATTCTCGAAAACCACGCCCGTGGAACTCGGTCAATCAGTTTCAAAGCCCACCAACTCCATTTCCTCCGAAAAATCAACACTTCCGTCTACTTGCGCTAATCCCGTTACCGTTACACCTGTCGTGTCAACGACGCCGATTACTGATTCAACGACGCCGGTTTCTGAGACAACGACAGCCGTTGCCGTTTCGACAGAGAAGATGTTTTCAGAGAACTCCTCTCATCAATTAGTTCTTGTTCGTTCGCGATCCGAGGGAGACATCGAGTTGTTCTCGTTGGAGAGGTCGAGAAGAGAACATTTCATCGGAAAGTGTTCGAAGCAGAGGTTGACGAGAACCGCGACGGAGGTGTTCGTCCACCGCACTCCGCCGGGAACGAGAAACAGAGCGGTGTTGAGGGATTCCGACGAAGCACCGCAGTCCAAGCCGAAAAGCGCGAAAGTTGAGGATTCGGGAGTGCGAGCGTTTTTCCTGATAAAGAACTTGGACACGGGGAAGGAGTTTATTGTGAACGAATGCACCGAAACCGGTGCGTGGAACAGGCTGAGTGATTTACAGACGGGGAGGCAGTTAACTATGGATGAGTTTGAAAAGACGGTGGGGAAATCGCGCGTGGTTAACGAGCTTATGCGACGCAGTACGAGGAACGAGAATTTGTCGCGGAAGCTGACTTCGAGTTCGTACATTTCGAGAAGTTTGAGGATGAGCAAGAGAAGAGGGGTTGCATTTCTGAAGAACATAAAGGGCGTGGCGAGTGGGTTCATTGGGGAGAGAGAGGCTGTTGGTAACGCAGCCGCCGCAACGGCGGCGGCGGAGAAGAGTCAGTGGGTGCGAGTGCGGCAGAGCGGGAAGTCGCACAAGGAGGTTTCGGCGTTGCATCTGTGTCAGGAGCTTCAGGGGCACGACGGGTCGATTTGGACGATTAGGTTTAGTTTGGATGGGAGGTTTCTGGCGAGTGCAGGTGAGGACAAGGTGATACACGTGTGGGAAGTGCAGGAGTGTGAGGTTATGTCGTTGAGGATCGACGAGGGGAGTTTCACACCTATTCACCCTTCCTTGCTTGCCTCCAACGACGGTTCGCCTTTCTCTCCGGCGGCGGCTGACAAGAAGAAGAAGGGCAAATTCGGAACCAAAAAGGGCCCCGCCATTCCTGACTATGTTCATGTTCCTGAAACTGTCTTCTCACTCTCCGACAAACCCTTCTGCACTTTCCAAGGACATTTGGATGATGTTTTAGATTTGTCATGGTCGCGATCTAAGCTACTTCTCTCATCTTCAATGGATAAAACGGTCAGATTATGGAACTTGGAGACTAGGACTTGCTTGTACAGGTTTCCCCACAGTGACTATGTAACCTGCATACAATTCAATCCTCTCAAAGATGATGTTTTCATAAGTGGTTCGCTGGACGCTAGGGTCAGAATATGGAGCATTCCTGAACGCCATGTTGTGGATTGGATTGATATCAATGACATGGTTACTGCATTGTCGTTTACACCTGATGGTCAGGGTGCTATTGTTGGTACCCACAAGGGCGGTTGTCGTACATATAGCACAAAAGATTGCAAACTAACTCAAACAGGAACAATTGAGATTTCACAAAAGAAATCCCAACTAAGAAAAGTCACTGGTTTTCAGTTTGTTCCAGGCAAACCATCAGAAATTCTTGTAACTTCGGCAGATTCAAGAATAAGAATATTGGAAGGTTCAGAAGTAGTTCAAAAGTACAAAGGTTTTCGTAATGCAAACAGTCAAATTGCAGCTTCATTTAGTCCAGATGGAAGATATATTATAAGTGCTAGCGAAGATTCTGAAGTATATGTGTGGAAGCGTGAAGATCATAGAAGTGCAGGCAGTGGAAAATTCAAAAGTATGCTAGTTACTCGTGCTCACGAGCACTTCAACTGCAAAGATGTTTCAGTAGCAATACCATGGAATTGTACCGTCAAAGGTGATCCTCCGCTAGTACCAGTGCCTTTTAAAAAGCATTCAAAACGTTCTCTGGGAGGTTCTATTGGTGGGGAAGAAACACCATCGCCATCTTCTGCAAATGGTAGTAAGAAAACTCTTCCACCACTTCCCAGGAAAAGTATTAGCCTTAACTCAGAAGGAGCTTCAAATTCCCCTAGGGAAGAACTTGCGGCAAATTTCCATGCAGAATCAGGACTTGGAGATTCATTTGGTAACAGTAAAAGAACGATACCTCAGTCTCCAATGAAAGATAATTGCCACACCGCAGAGGAAGATGACCTTGAAGCATTTTCTCGCACAGATTCAGGATTTAGTGCTTCTTTTAGAACTGCATCATCCTCATCTAGGTTTAGTGATGCACTTTCTTCAAGTGGATCATTTTCTTCATCTTATTCATTATTGGACAGTGGCCACATTTCCTCCACGGTTGTTCCTACGGCATGGGGTTTGGTAATTGTGACAGCTGGGTTAGGAGGTGAGATCAGATGCTATCAAAATTTTGGGCTGCCAAGAAGGATTAGACAACCTCATCTTTTTGGAAGCTATAATAGTTTTACTAACACTTAG 2859 0.4827 MGRRKTMTMDWDGLGDVDDDDAFFESYSRLSTAAPLDLASSDDDDDDDFDDPRLSFASAISSAPSRRNSLSPTMDAAQDYGVWMAAPVSIDERRKRLLHGMGLDDDKEFSKTTPVELGQSVSKPTNSISSEKSTLPSTCANPVTVTPVVSTTPITDSTTPVSETTTAVAVSTEKMFSENSSHQLVLVRSRSEGDIELFSLERSRREHFIGKCSKQRLTRTATEVFVHRTPPGTRNRAVLRDSDEAPQSKPKSAKVEDSGVRAFFLIKNLDTGKEFIVNECTETGAWNRLSDLQTGRQLTMDEFEKTVGKSRVVNELMRRSTRNENLSRKLTSSSYISRSLRMSKRRGVAFLKNIKGVASGFIGEREAVGNAAAATAAAEKSQWVRVRQSGKSHKEVSALHLCQELQGHDGSIWTIRFSLDGRFLASAGEDKVIHVWEVQECEVMSLRIDEGSFTPIHPSLLASNDGSPFSPAAADKKKKGKFGTKKGPAIPDYVHVPETVFSLSDKPFCTFQGHLDDVLDLSWSRSKLLLSSSMDKTVRLWNLETRTCLYRFPHSDYVTCIQFNPLKDDVFISGSLDARVRIWSIPERHVVDWIDINDMVTALSFTPDGQGAIVGTHKGGCRTYSTKDCKLTQTGTIEISQKKSQLRKVTGFQFVPGKPSEILVTSADSRIRILEGSEVVQKYKGFRNANSQIAASFSPDGRYIISASEDSEVYVWKREDHRSAGSGKFKSMLVTRAHEHFNCKDVSVAIPWNCTVKGDPPLVPVPFKKHSKRSLGGSIGGEETPSPSSANGSKKTLPPLPRKSISLNSEGASNSPREELAANFHAESGLGDSFGNSKRTIPQSPMKDNCHTAEEDDLEAFSRTDSGFSASFRTASSSSRFSDALSSSGSFSSSYSLLDSGHISSTVVPTAWGLVIVTAGLGGEIRCYQNFGLPRRIRQPHLFGSYNSFTNT 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01206 952 SUPERFAMILY WD40 repeat-like 399 720 IPR036322 GO:0005515
Vian9g01206 952 PRINTS G protein beta WD-40 repeat signature 529 543 IPR020472 -
Vian9g01206 952 PRINTS G protein beta WD-40 repeat signature 571 585 IPR020472 -
Vian9g01206 952 PRINTS G protein beta WD-40 repeat signature 424 438 IPR020472 -
Vian9g01206 952 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 446 IPR001680 GO:0005515
Vian9g01206 952 MobiDBLite consensus disorder prediction 781 795 - -
Vian9g01206 952 Gene3D - 351 469 IPR015943 GO:0005515
Vian9g01206 952 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 405 439 - -
Vian9g01206 952 MobiDBLite consensus disorder prediction 833 847 - -
Vian9g01206 952 ProSiteProfiles Trp-Asp (WD) repeats profile. 551 585 IPR001680 GO:0005515
Vian9g01206 952 MobiDBLite consensus disorder prediction 230 254 - -
Vian9g01206 952 ProSiteProfiles Trp-Asp (WD) repeats profile. 696 726 IPR001680 GO:0005515
Vian9g01206 952 ProSitePatterns Trp-Asp (WD) repeats signature. 529 543 IPR019775 -
Vian9g01206 952 SMART WD40_4 639 675 IPR001680 GO:0005515
Vian9g01206 952 SMART WD40_4 504 542 IPR001680 GO:0005515
Vian9g01206 952 SMART WD40_4 890 929 IPR001680 GO:0005515
Vian9g01206 952 SMART WD40_4 586 625 IPR001680 GO:0005515
Vian9g01206 952 SMART WD40_4 545 584 IPR001680 GO:0005515
Vian9g01206 952 SMART WD40_4 398 437 IPR001680 GO:0005515
Vian9g01206 952 SMART WD40_4 676 717 IPR001680 GO:0005515
Vian9g01206 952 MobiDBLite consensus disorder prediction 802 816 - -
Vian9g01206 952 ProSiteProfiles Trp-Asp (WD) repeats profile. 511 551 IPR001680 GO:0005515
Vian9g01206 952 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 511 545 - -
Vian9g01206 952 PANTHER WD REPEAT DOMAIN 44 18 934 IPR040324 -
Vian9g01206 952 MobiDBLite consensus disorder prediction 237 254 - -
Vian9g01206 952 MobiDBLite consensus disorder prediction 763 850 - -
Vian9g01206 952 MobiDBLite consensus disorder prediction 109 138 - -
Vian9g01206 952 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 551 585 - -
Vian9g01206 952 MobiDBLite consensus disorder prediction 113 138 - -
Vian9g01206 952 Pfam WD domain, G-beta repeat 547 584 IPR001680 GO:0005515
Vian9g01206 952 Pfam WD domain, G-beta repeat 507 542 IPR001680 GO:0005515
Vian9g01206 952 Pfam WD domain, G-beta repeat 683 717 IPR001680 GO:0005515
Vian9g01206 952 Pfam WD domain, G-beta repeat 403 436 IPR001680 GO:0005515
Vian9g01206 952 ProSitePatterns Trp-Asp (WD) repeats signature. 424 438 IPR019775 -
Vian9g01206 952 Gene3D - 489 758 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01206 Vian-Chr9 25386091 25396169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01206 503 714 U-box Gene Family AT2G33340 25.000 3.08e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01206 K20241 - gmx:100779364 1170.61