Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01202 ATGTTTCTAGAAAGGGAGAGAGATCAGAGAAAGAATGGAGAAGCTCTGCTAGGGCACACACACACCAAACCGAAGATGATCAGAGAGTTGAGAGCAAAAACGGAAAGCATGCACACACACAAGGTTGCTTCTTTTACTGGGGAGAAACAAGCAGTGTCTGATTACAGAAAATTTCTTGTAGAAGCTTACGTAACTGGCGTTCATGAAGGTTCTGTTGCTGGCGTGGCCCTTGGCACAGTTATGCTTCTTGTTTTCAGTGGTTATGCTTTGGCAGTGTGGTTTGGCGCAAAGATGATTATCGAAAATGGAAAAAAATATAATGGGGGCACGGTGCTCAATGTGATTGCTTCTTTATTAACTGCTTCAATGTCTCTTGGGGAGGCATCCCCTATCATGAGTGCTTTTGCTGCGGGTCAAGCTGCTGCATACAAAATGTTTGAAACAATTACGAGGACGCCAGAGATTGATGCTTATGATCCAAATGGGAAAATATTAGAGGATATTGAAGGTGAAATAGAGTTGAGGGATGTTTGCTTCAGTTATCCAGCGAGGCCTGAGGAGTTGGTACTCAATAGGTTCTCTCTTGATATACCTAGTGGTACGAGTGCTGCACTGGTGGGACAAAGCGGGAGTGGAAAATCCACGGTTATCAGTTTGATAGAGAGATTCTATGATCCTCAAGAAGGTCAAGTTCTTATTGATGGCATTAACCTGAAAGAGTTTCAGCTTAGGTGGATGAGGGGGAAAATTGGCCTTGTTAATCAGGAGCCAGTGTTGTTTGCATCAAGCATTAAGGATAACATTGCATATGGAAAGGAAGGAGCCACAATTGAAGAGATTAGATCAGCATCTGAACTTGCAAATGCTGCTAAATTCATTGATAAACTACCACAGGGATTGAACACAATGGTTGGTGAACAAGGAACTCAACTCTCTGGTGGACAAAAACAGCGCATTGCCATAGCAAGAGCAATCCTAAAGGATCCAAGAATTCTTCTTCTGGACGAAGCTACAAGTGCCCTTGATGCAGAGTCCGAAAGAACAGTGCAAGAGGCTCTAGACAGGGTCATGGTTAATCGAACTACTGTTGTTGTGGCACATCGGTTGAGCACAGTGAGAAATGCTGATACGATTGTTGTAATTCATAAAGGGAAGGTGGTTGAAAAAGGAACACACTCAGAACTGGTCAAGGATCTCGAGGGAGCTTACTCTCAATTGATACGTTTACAAGAAGTAAACAAAGAATCAGAAGAAACTACAAGCTTTCACAGCAAGAGCGAACTTTCTACGGAATCCTCTGCACTGTTAACCAAAAAGATATCAACTTGGAGATCTATCAGTAGGGGATCATCTTTGGGGAGTAGTAGCCGTCACTCATTTTCGCTTTCTGGTTTACCCAAAGGTGTTAGTGTCCCTGATACTGAAAGTGATGACGCATTACTCGAAACACAAGAACAAGTGGTTTCACTCCGCCGGCTTGCTTCCCTCAACAAACCAGAGGTTCCAGTTCTTCTGATTGGATGTCTAGCTGCCATAGCAAATGGTGTTATACTTCCAATATTTGGGGTGTTGATTTCCACTGCGGTCAAAATATTTTATGAGCCAGTTGATGAGATGAAAAAGGACTCCAAATTTTGGGCACTTATGTTCGTGGTTCTTGGTCTTGCATCATTTTTGGTAATTCCAGCTCGAGCATACTTTTTTTCTGTGGCTGGATGCAAGTTAATCCAACGTATCAGGGTAATATGTTTTGAGAAAGTGGTGAACATGGAGGTTGGTTGGTTTGATGAGCCTAGCAACTCAAGTGGTGCTATAAGTGCAAGGCTCTCAGCAATTGCTACTTCTGTGCGCACCCTTGTTGGTGATGCACTGGGGCTGTTGGTCCAAAATTTAACATGTGCCTTGGCAGGTTTGATTATTGCTTTCATTGCATGCTGGCAATTGGCTTTGATTATTCTTGTCTTGATTCCCCTTATTGGCGCAAATGGCTATGTTCAAACGAAGTTCATGAAAGGGTTCAGCAAAGACGCAAAGATGATGTACGAGGAAGCAAGCCAAGTTGCCAAGGATGCAGTTGGAAATATAAGAACAGTAGCTTCTTTCTGTGCAGAAGATAAGGTAATGGAATTGTATAGGAAGAAATGTGAAGACCCCATGAAAACAGGGATATGGCAAGGGTTGATCAGCGGATTAGGATTTGGGGTTTCATTTTTCTTACTATTTTGTGTCTATGCAACTAGTTTCTATGCAGGAGCTAGACTAGTGGCCGCTGGAGAAACATCATTCTCCAATGTTTTTCGGGTTTTCTTTGCTTTAACTATGGCAGCTATTGGAGTTTCCCAGTTTAGCACAATTTCTCCTGATTCTGGCAAAGCCAAGTCAGCAACTGCTGCCATATTTGGAATAATTGATAAGAAGTCAGAGATAGATCCAAGTGATGAGACTGGTATCACATTGGATATAGTTGAGGGAGAAATTGAGCTTCATCAAGTTAGTTTCAACTACCCGTCAAGGCCAAAGATACAGATTTTTCGAGACCTTAACCTGGTTATCCATTCTGGCAAGACAGTGGCCCTTGTTGGAGAAAGTGGATGTGGAAAATCGACAGTGATTTCGTTGTTGCAGAGATTTTATGTTCCCAATTCAGGTGAAATCAGACTTGACGGTGTACCAATTGAGGAGTTACAATTGAAGTGGTTTAGGCAGCAAATGGGTTTGGTAAGCCAAGAGCCAGTATTGTTCAATGACACTATTCGTGGTAACATTGCTTATGGGAAGGGAGGTGAAGCAAGTGAAGCAGAAATCATAACAGCCGCAGAACAAGCTAATGCCCATGTATTTATCAGTGCCTTACAACAGAGTTATGACACCGTAGTGGGAGAAAGGGGAACACAATTATCTGGTGGGCAGAAGCAAAGGATAGCCATTGCCCGTGCTTTGATTAAAAGTCCAAAGATATTGCTATTAGACGAAGCCACAAGTGCATTAGACGCTGAGTCAGAGAGAGTTGTTCAGGATGCATTGGACAAAGTCATTGTGAATAGAACCACTGTGGTTGTGGCACATCGCCTATCTGCAATAAAAAATGCAGATTTGATTGCTGTTGTTAAAGATGGAGTCATCGTGGAGAAGGGAAGCCACGAAACACTCGTTAAAGTCAAGAACGGGTTTTACGCTTCCTTAGTCCAACTTCACTCAAATGGTTCAAAAACTACAGTACCCTGA 3225 0.4267 MFLERERDQRKNGEALLGHTHTKPKMIRELRAKTESMHTHKVASFTGEKQAVSDYRKFLVEAYVTGVHEGSVAGVALGTVMLLVFSGYALAVWFGAKMIIENGKKYNGGTVLNVIASLLTASMSLGEASPIMSAFAAGQAAAYKMFETITRTPEIDAYDPNGKILEDIEGEIELRDVCFSYPARPEELVLNRFSLDIPSGTSAALVGQSGSGKSTVISLIERFYDPQEGQVLIDGINLKEFQLRWMRGKIGLVNQEPVLFASSIKDNIAYGKEGATIEEIRSASELANAAKFIDKLPQGLNTMVGEQGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERTVQEALDRVMVNRTTVVVAHRLSTVRNADTIVVIHKGKVVEKGTHSELVKDLEGAYSQLIRLQEVNKESEETTSFHSKSELSTESSALLTKKISTWRSISRGSSLGSSSRHSFSLSGLPKGVSVPDTESDDALLETQEQVVSLRRLASLNKPEVPVLLIGCLAAIANGVILPIFGVLISTAVKIFYEPVDEMKKDSKFWALMFVVLGLASFLVIPARAYFFSVAGCKLIQRIRVICFEKVVNMEVGWFDEPSNSSGAISARLSAIATSVRTLVGDALGLLVQNLTCALAGLIIAFIACWQLALIILVLIPLIGANGYVQTKFMKGFSKDAKMMYEEASQVAKDAVGNIRTVASFCAEDKVMELYRKKCEDPMKTGIWQGLISGLGFGVSFFLLFCVYATSFYAGARLVAAGETSFSNVFRVFFALTMAAIGVSQFSTISPDSGKAKSATAAIFGIIDKKSEIDPSDETGITLDIVEGEIELHQVSFNYPSRPKIQIFRDLNLVIHSGKTVALVGESGCGKSTVISLLQRFYVPNSGEIRLDGVPIEELQLKWFRQQMGLVSQEPVLFNDTIRGNIAYGKGGEASEAEIITAAEQANAHVFISALQQSYDTVVGERGTQLSGGQKQRIAIARALIKSPKILLLDEATSALDAESERVVQDALDKVIVNRTTVVVAHRLSAIKNADLIAVVKDGVIVEKGSHETLVKVKNGFYASLVQLHSNGSKTTVP 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01202 1074 CDD ABC_MTABC3_MDL1_MDL2 172 410 - -
Vian9g01202 1074 MobiDBLite consensus disorder prediction 447 463 - -
Vian9g01202 1074 FunFam ABC transporter B family member 1 484 792 - -
Vian9g01202 1074 SUPERFAMILY ABC transporter transmembrane region 42 156 IPR036640 GO:0005524|GO:0016020
Vian9g01202 1074 Pfam ABC transporter 845 994 IPR003439 GO:0005524
Vian9g01202 1074 SUPERFAMILY ABC transporter transmembrane region 491 811 IPR036640 GO:0005524|GO:0016020
Vian9g01202 1074 CDD ABC_6TM_Pgp_ABCB1_D2_like 494 809 - -
Vian9g01202 1074 CDD ABC_MTABC3_MDL1_MDL2 826 1064 - -
Vian9g01202 1074 ProSitePatterns ABC transporters family signature. 966 980 IPR017871 GO:0005524|GO:0016887
Vian9g01202 1074 Gene3D ABC transporter type 1, transmembrane domain 40 438 IPR036640 GO:0005524|GO:0016020
Vian9g01202 1074 FunFam ABC transporter B family member 1 816 1066 - -
Vian9g01202 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 410 IPR027417 -
Vian9g01202 1074 MobiDBLite consensus disorder prediction 447 474 - -
Vian9g01202 1074 Gene3D ABC transporter type 1, transmembrane domain 484 792 IPR036640 GO:0005524|GO:0016020
Vian9g01202 1074 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 42 137 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g01202 1074 Pfam ABC transporter transmembrane region 42 122 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g01202 1074 Pfam ABC transporter transmembrane region 504 776 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g01202 1074 Gene3D ABC transporter type 1, transmembrane domain 793 1068 IPR036640 GO:0005524|GO:0016020
Vian9g01202 1074 ProSitePatterns ABC transporters family signature. 311 325 IPR017871 GO:0005524|GO:0016887
Vian9g01202 1074 Gene3D - 816 1066 IPR027417 -
Vian9g01202 1074 Gene3D - 162 411 IPR027417 -
Vian9g01202 1074 Pfam ABC transporter 190 339 IPR003439 GO:0005524
Vian9g01202 1074 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 172 408 IPR003439 GO:0005524
Vian9g01202 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 816 1064 IPR027417 -
Vian9g01202 1074 PANTHER ABC TRANSPORTER B FAMILY 483 1064 IPR039421 -
Vian9g01202 1074 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 826 1063 IPR003439 GO:0005524
Vian9g01202 1074 FunFam ABC transporter B family member 1 162 411 - -
Vian9g01202 1074 SMART AAA_5 853 1047 IPR003593 GO:0016887
Vian9g01202 1074 SMART AAA_5 199 385 IPR003593 GO:0016887
Vian9g01202 1074 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 505 791 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01202 Vian-Chr9 25202576 25208593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01202 506 1073 Calmodulin-binding Proteins AT2G36910 40.035 1.35e-124 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01202 K05658 - gmx:100800034 1563.13