Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01201 ATGGATGGCAAAGGAAGTTCTGCGGAAAGGGAAGAACAGAGAAAACAGAAGGGAAAAGCAGAGACGGTACCGTTTCGCAAGTTGTTCGCGTTTGCAGACTGCGCAGACATTATGTTGATGGCGGTTGGAAGCATTGGCGCCATTGGAAACGGTTTGGGATTTCCTCTGATGACATTACTATTTGGTGAAATAATCCATTCCTTCGGATCTAACCAGAACAGCTCCGGCATAGTAGAAAAAGTGTCTCAGGTTTCTCTCAAATTTGTGTACTTGGCAGTAGGATCTGGGGTGGCAGCTTTCCTTCAGGTGACTTGCTGGATGGTGACTGGGGAAAGACAGGCGGCGAGAATAAGGGAATTGTATCTGAAAACTATACTAAGACAAGACATTGCTTTCTTTGACAAGGCGACAAACACCGGTGAAGTGATAGGAAGAATATCAGGTGATACTGTTCTCATTCAAGAAGCCATGGGAGAGAAGGTTGGGAAATTTGTGCAGCTGATAGCAACATTCGTAGGGGGCTTCGCAATATCATTTGCCAAAGGGTGGCTTCTGACACTTGTCATGTTGTGCCTTTTTCCGCTTCTTGTTGCGTCAGGGGCTGCTATGGCCATCATGCAAGGCAGGATGGCTTCTAGAGGTCAAGTTGCCTATGCAAAAGCTGCACACATTGTTCAGCAGACAATTGCCTCAATAAGAACAGTAAGAAGTTTAACATATCTACAGACTTATACTCATGATTCCTTAATTACTGTCAATTATATATTTTTTGTTTTAATATTTACAGTAATCACGTAA 798 0.4348 MDGKGSSAEREEQRKQKGKAETVPFRKLFAFADCADIMLMAVGSIGAIGNGLGFPLMTLLFGEIIHSFGSNQNSSGIVEKVSQVSLKFVYLAVGSGVAAFLQVTCWMVTGERQAARIRELYLKTILRQDIAFFDKATNTGEVIGRISGDTVLIQEAMGEKVGKFVQLIATFVGGFAISFAKGWLLTLVMLCLFPLLVASGAAMAIMQGRMASRGQVAYAKAAHIVQQTIASIRTVRSLTYLQTYTHDSLITVNYIFFVLIFTVIT 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01201 265 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 238 - -
Vian9g01201 265 Pfam ABC transporter transmembrane region 44 245 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g01201 265 SUPERFAMILY ABC transporter transmembrane region 21 243 IPR036640 GO:0005524|GO:0016020
Vian9g01201 265 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 238 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian9g01201 265 PANTHER ABC TRANSPORTER B FAMILY 6 239 IPR039421 -
Vian9g01201 265 Gene3D ABC transporter type 1, transmembrane domain 36 263 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01201 Vian-Chr9 25190364 25196083 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01201 1 235 Calmodulin-binding Proteins AT2G36910 36.214 4.62e-49 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01201 K05658 - gmx:100777909 359.762