Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01157 ATGGATGTGATTTGTCAAGCTAAATCTGGGATGGGAAAGACTGAACTGGCTTATCAGATTTGCAATGAATTTGAGAGATTCAGCACATATCTTCTTGATATAAAGGTTGTTGTTTTCTATGGTGGCATCAATATCAAGGTTCACAAAGAATTGCTCAAGAATGAATGTCCTCATATTGTTGTTGGAACACCTGAGAGGATTCTTGCTCTGGCTAGAGATAAGGACCTTGGTTTAAAGAACGTGAGACATTTCATACTTGATGAGTGCGCCAAGATGCTTGAATCACTTGATATGAGAAGAGACGTCCAGGAGATTTTCAAATTGACTCCTCATAATAAACAACTCCTTGAAGACTTGCGTAGGGGATGGAATCTCCATGGATGGATAGAGGTTGCAGAAGCTATGAATGATGAAAAGGAGAACTATTTTAGTTCAACTATAGTAGAGAAATCCTACGAGAGAGTGGAGGGTGCAGGGGAATGTGGGAGGTCTACTACTCCAGATAATGAAGCACTGAAGCTTATTCCTTGTGCCTCTGCAGCACAAGATGAAAATGCTAAAGTTTCTCAGAGTTGCTGTGCTCAGGTCCAGAAACTTGGCAAGAACCCTAGTTGTCTGTGTGCTGTTATGCTTTCCAACACAGCCAAGTTATCTGGAGCTGACCCTAAGGTTGCCATAACCATCCCAAAACGCTGCAACCTTCCTAATCGCCCTGTTGGTTACAAGTGTGGACGTAAGTATATTTCACATCTTCTCTTGTTTTGGGATTTGTTTGAATACTCTTAA 786 0.4135 MDVICQAKSGMGKTELAYQICNEFERFSTYLLDIKVVVFYGGINIKVHKELLKNECPHIVVGTPERILALARDKDLGLKNVRHFILDECAKMLESLDMRRDVQEIFKLTPHNKQLLEDLRRGWNLHGWIEVAEAMNDEKENYFSSTIVEKSYERVEGAGECGRSTTPDNEALKLIPCASAAQDENAKVSQSCCAQVQKLGKNPSCLCAVMLSNTAKLSGADPKVAITIPKRCNLPNRPVGYKCGRKYISHLLLFWDLFEYS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01157 261 PANTHER LIPID BINDING PROTEIN-RELATED 155 244 IPR039265 GO:0005504|GO:0009627
Vian9g01157 261 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 14 116 IPR014001 -
Vian9g01157 261 Pfam Probable lipid transfer 169 239 IPR016140 -
Vian9g01157 261 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 170 238 IPR036312 -
Vian9g01157 261 CDD AAI_LTSS 174 234 - -
Vian9g01157 261 Gene3D - 166 239 IPR036312 -
Vian9g01157 261 Pfam DEAD/DEAH box helicase 14 114 IPR011545 GO:0003676|GO:0005524
Vian9g01157 261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 115 IPR027417 -
Vian9g01157 261 Gene3D - 14 150 IPR027417 -
Vian9g01157 261 SMART ultradead3 1 142 IPR014001 -
Vian9g01157 261 SMART aai_6 161 243 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01157 Vian-Chr9 24242078 24245322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01157 1 116 Eukaryotic Initiation Factors Gene Family AT5G11170 69.930 2.14e-64 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01157 K12812 - vum:124840595 227.639