Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01155 ATGGGGGCTCGTTGCTCTAAATTCTCTTTCTGCTGGTTCCACTCCCACCTCAAGCCTTCTGTTCTTGAGTCCTCTGACCAAGCAGAAAATGGTGAGAAGAATGAGAGAAAATTGTGGCCCAGTTTTGGTGAGTTCAGTTTGGAGCAACTGAAGACTGCCACAAATGGGTTCTCCTCCGAAAACATAGTGTCTGAGCATGGTGAGAAAGCTCCCAATGTTGTATACAAAGCAAAGCTTGATAATGGACAGTGGATCGCCATCAAACGTTTCAACAAGTTTGCCTGGCCTGATTCTCGCCAATTCCTAGAGGAAGCCAAACAAGTGGGGAGCCTTAGAAGCGAACGCCTAGCAAATTTGATTGGTTATTGCTATGAAGGGGAAGAGAGGCTTCTAGTAGCAGAGTTTATGCCACATGAAACTCTGGCCAAGCATCTATTTCATTGGGAGGCACAGCCAATGAAGTGGGCCATGAGGTTGAGGGTCGCTTTCTACTTAGCTCAAGCTCTAGAATATTGCACTAGTAAAGGAAGGGGCTTGTATCATGATCTCAATGCCTATAGGATCTTGTTTGATCAGGATGGTAATCCCAGGTTGTCCTGCTTTGGACTCATGAAGAACAGCAGAGATGGCAAGAGTTACAGTACAAACTTGGCTTTCACCCCTCCTGAGTACTTACGGACTGGTAGAGTGACCCCAGAGAGCGTGGTTTACAGTTTTGGAACTCTGCTGCTAGATCTCTTGAGTGGTAAACATATTCCACCAAGCCACGCACTTGATCTTATTCGTGGCAAAAACTTTCTGATGTTGATGGATTCTGCCTTAGAGGGTCACTTTTCAAAGGATGATGGAACTGAGTTGGTTCGTTTGGCCTCTCGTTGTTTGCAATACGAAGCTCGTGAGAGGCCAAATGCAAAGTCTCTTGTTACGTCTCTTATGTCACTTCAGAAAGAAACAGAGGTCCCGTCGTATGTTCTGATGGGTCTACGGCAAGAAACTGCATCCTCAACAAAGCAATTGTCGTTAACACCTTTCGGTGAAGCTTGTCTGAGACTTGATCTTACTGCAATCCATGAAATATTGGAGAAGACTGGTTACAAGGACGACGAAGGAATTGCGAATGAGCTTTCCTTTCAATTGTGGACCAGCCAAATGCAGGAAACCTTGAATTTGAAGAAGCATGGCGATACAGCTTTTCGAGCTAAAGACTTTGTCACTGCCATTGACTGCTACACTCAGTTCATAGAGGGAGGGACCATGGTGTCACCCACAGTGTATGCAAGGAGATGCTTATCATATTTGATGAATGACATGGCACAAGAAGCTCTTGGGGATGCCATGCAAGCCCAAGTTGTATCACCAGAATGGCCTACAGCTTTGTATCTTCAAGCAGCTTGTCTTTTTAGCCTTGGAATGGAGAATGATGCTCAAGAGACTCTCAAAGATGGGACTAACATGGAAGCCAGAAAAAACAAAAACTGA 1479 0.4517 MGARCSKFSFCWFHSHLKPSVLESSDQAENGEKNERKLWPSFGEFSLEQLKTATNGFSSENIVSEHGEKAPNVVYKAKLDNGQWIAIKRFNKFAWPDSRQFLEEAKQVGSLRSERLANLIGYCYEGEERLLVAEFMPHETLAKHLFHWEAQPMKWAMRLRVAFYLAQALEYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVTSLMSLQKETEVPSYVLMGLRQETASSTKQLSLTPFGEACLRLDLTAIHEILEKTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFVTAIDCYTQFIEGGTMVSPTVYARRCLSYLMNDMAQEALGDAMQAQVVSPEWPTALYLQAACLFSLGMENDAQETLKDGTNMEARKNKN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01155 492 Gene3D Tetratricopeptide repeat domain 384 492 IPR011990 GO:0005515
Vian9g01155 492 ProSiteProfiles Protein kinase domain profile. 60 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01155 492 Pfam Protein tyrosine and serine/threonine kinase 74 311 IPR001245 GO:0004672|GO:0006468
Vian9g01155 492 SUPERFAMILY TPR-like 388 481 IPR011990 GO:0005515
Vian9g01155 492 FunFam probable serine/threonine-protein kinase At5g41260 137 328 - -
Vian9g01155 492 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
Vian9g01155 492 SUPERFAMILY Protein kinase-like (PK-like) 37 321 IPR011009 -
Vian9g01155 492 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 22 491 IPR045845 GO:0004672|GO:0009742
Vian9g01155 492 FunFam probable serine/threonine-protein kinase At4g35230 32 135 - -
Vian9g01155 492 Gene3D Transferase(Phosphotransferase) domain 1 137 328 - -
Vian9g01155 492 FunFam probable serine/threonine-protein kinase At4g35230 385 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01155 Vian-Chr9 24211187 24214826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01155 45 311 Glycoside Hydrolase AT3G07070 34.915 9.63e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vian9g01155 PK_Tyr_Ser-Thr 2.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01155 - - gmx:100814477 976.081