Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01154 ATGTTTAACCCTAACCATGTTTTCCACCATTTTCAAGACCACATCGTGAATGTCCCTCCGTTTGTGATGGACGGTTCCAACCCCATCGTAACCCCCATGTATGGGAACGGGATACCAACCCCTTCTTTCGGTGATGGGTCTTTTGCTAACATTAACAGTCACCAGCCTGTGATGTTAGTACCCAAGAACAACAGCAAAATTGAAGCTTTGTATGATGACCATAAAGGCAAAGTCATATGGGATTTTTCCCAGAAAACCATGGTTCATCCTTTTGAAGCGTCTTCTCCCAACTCACCATCTCCTTTCTGTCTCTCTAATGAGTATGGATTGGGTATGAGTGAATTTCATAGGGACACTGATCGAAGGATGGTAGAGGTGGAAAACAATACCCACAATGCTACTGATAATATAATCAAAGGACAGTGGACTCCCGAAGAAGACAGTGCTCTTGTGGAGTTGGTGAATCAATTTGGACCGAAGAAATGGTCAGAAATTGCAAAGTTGATGTGCGGCAGAGTTGGAAAGCAATGTCGAGAAAGATGGCACAATCATCTCCGGCCAAACATTAGGAAGGAGTCGTGGAGCCTGGAAGAAGACATGATTCTGATCAAAGCCCACCAGGAATTTGGCAACAGGTGGTCAGAGATTGCTAAGAGGCTACCTGGAAGGACTGAAAATAGTATTAAGAATCATTGGAATGGAACCAAGAGACGCCAGAGTTGCAGGAGCTACAACGGGAGTAAGAAAAACCCTTACGAAGGATCAATGCTCCGTGCTTACGTTAAAAGGGTCACTGCTATGGAAGAATCTACAAAAGTGTTGAAGAAAGCCACAAGCAAAAAGAATAAGAATGGGCTAGCCACTTTGTTCAGGTGTACAAACGAAATGTTTATTGGAAATAGCAGCAACTACGCGCCATTGCAAGTTAAAAGTAATAATATTGGGGTTTCATATGGTGCAATTGGAACGAATGCAATCAACAGGGGAATGAATCCGATAAATATTAGTTATGCAGGAATGTCATTTTATGCTGTTATCTATCTTCCGGATTTTGCGTTTCTTTTAGTTCTCATGCGGTAA 1080 0.425 MFNPNHVFHHFQDHIVNVPPFVMDGSNPIVTPMYGNGIPTPSFGDGSFANINSHQPVMLVPKNNSKIEALYDDHKGKVIWDFSQKTMVHPFEASSPNSPSPFCLSNEYGLGMSEFHRDTDRRMVEVENNTHNATDNIIKGQWTPEEDSALVELVNQFGPKKWSEIAKLMCGRVGKQCRERWHNHLRPNIRKESWSLEEDMILIKAHQEFGNRWSEIAKRLPGRTENSIKNHWNGTKRRQSCRSYNGSKKNPYEGSMLRAYVKRVTAMEESTKVLKKATSKKNKNGLATLFRCTNEMFIGNSSNYAPLQVKSNNIGVSYGAIGTNAINRGMNPINISYAGMSFYAVIYLPDFAFLLVLMR 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01154 359 CDD SANT 193 233 IPR001005 -
Vian9g01154 359 Gene3D - 138 190 - -
Vian9g01154 359 ProSiteProfiles Myb-like domain profile. 134 185 IPR001005 -
Vian9g01154 359 SUPERFAMILY Homeodomain-like 136 232 IPR009057 -
Vian9g01154 359 CDD SANT 142 185 IPR001005 -
Vian9g01154 359 Gene3D - 193 235 - -
Vian9g01154 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 190 240 IPR017930 -
Vian9g01154 359 ProSiteProfiles Myb-like domain profile. 186 236 IPR001005 -
Vian9g01154 359 Pfam Myb-like DNA-binding domain 142 199 - -
Vian9g01154 359 FunFam Transcriptional activator Myb isoform A 138 191 - -
Vian9g01154 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 189 IPR017930 -
Vian9g01154 359 PANTHER MYB PROTEIN-RELATED 120 271 - -
Vian9g01154 359 SMART sant 190 238 IPR001005 -
Vian9g01154 359 SMART sant 138 187 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01154 Vian-Chr9 24187054 24190667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01154 137 264 MYB Transcription Factor Family AT4G18770 61.364 1.17e-51 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian9g01154 Myb_DNA-bind_6 7.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01154 K09422 - vra:106773360 546.199