Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01133 ATGGGTGCTTGTTGGAGCAGTGGGACGAAGGCTGTGAGCCCTTCCAGTGCAGTTGTCAAGTTGATGAAGATTTGGACTGCCATAGACATGCATGCTATACTTCAGATCCGGTTCACTTCTAGAAGTGTGAGCAGAGAGGGCTATGACATCCATTCAAGTAGCAGGAACTCATCAGCCTCCATACCCATGACCCCTCGGAGTGAGGGTGAGATCTTACAATCTTCAAATTTGAAAAGCTACAGCTACAATGACCTAAGAATAGCAACAAAACATTTCAGCCCAGACAATGTCTTAGGGGAAGGTGGATTTGGTTCAGTTTTTAAGGGTTGGATTGATGAACATTCGCTTTCTGTTACCAAGCCTGGTATAGGCATGGTTGTTGCTGTGAAGAAACTTAACCAAGAGGGGTTCCAGGGTCACAAGGAATGGCTGGCTGAAATCAACTATCTCGGGCAACTGCAGCATCCTAATCTTGTCAAGTTGATAGGCTACTGCTTAGAGGATCAGCACAGGCTTCTAGTTTATGAATATATGCCAAAGGGCAGTGTGGAGAATCATCTATTCAGGAGGGGGTCTCATTTTCAGCAGCTTTCTTGGACATTAAGATTGAAAATATCCCTTGGGGCTGCTAGGGGTCTTGCTTTTCTCCATAACTCAGAAACTAAAGTCATATACAGAGACTTTAAGACTTCTAATATCCTGCTTGATACGAACTATAATGCCAGACTTTCTGATTTTGGGCTGGCCAGAGATGGACCCACTGGTGATAAGAGCCATGTTTCTACAAGGGTCATGGGAACACATGGATATGCAGCACCAGAGTATCTAGCAACAGGTCACCTCACTGCCAAGAGTGATGTGTATAGTTTTGGAGTAGTACTTTTGGAAATGTTATCAGGAAGACGAGCCATAGACAAGAATCGGCCATCTGGGGAACAGTGCTTAGTTGAATGGGCAAAACCTTACCTTGCTAACAAAAGAAGGGTTTTTCGTGTAATGGATAGTCGTCTAGAAGGTCAGTATTCCCTTAACCAAGCTCAAAGAGCAGCCACTCTTTCTTTTCAGTGTCTTTCTGTAGAGCCCAAATACAGGCCAAACATGGATGAGGTGGTGAGAGTATTAGAGCAAATACGTGAGTCAAATGATCAAGTGAAAAATGGTGATCATAATAAAAAGCGTCGACTAAGTGGCTCTGCCTCTGGCCATGGCCACCCCAATGGACTCCCTGCATCTGCTAGCACAGGAAGTTCTGATGCTCCAAAAAAGTTTGCTTATCCAAGGCCTTCTGCTTCTTTTCTGTATGCTTAG 1308 0.445 MGACWSSGTKAVSPSSAVVKLMKIWTAIDMHAILQIRFTSRSVSREGYDIHSSSRNSSASIPMTPRSEGEILQSSNLKSYSYNDLRIATKHFSPDNVLGEGGFGSVFKGWIDEHSLSVTKPGIGMVVAVKKLNQEGFQGHKEWLAEINYLGQLQHPNLVKLIGYCLEDQHRLLVYEYMPKGSVENHLFRRGSHFQQLSWTLRLKISLGAARGLAFLHNSETKVIYRDFKTSNILLDTNYNARLSDFGLARDGPTGDKSHVSTRVMGTHGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAIDKNRPSGEQCLVEWAKPYLANKRRVFRVMDSRLEGQYSLNQAQRAATLSFQCLSVEPKYRPNMDEVVRVLEQIRESNDQVKNGDHNKKRRLSGSASGHGHPNGLPASASTGSSDAPKKFAYPRPSASFLYA 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01133 435 Gene3D Transferase(Phosphotransferase) domain 1 178 401 - -
Vian9g01133 435 ProSiteProfiles Protein kinase domain profile. 92 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01133 435 SUPERFAMILY Protein kinase-like (PK-like) 58 374 IPR011009 -
Vian9g01133 435 PANTHER OS01G0588500 PROTEIN-RELATED 56 378 - -
Vian9g01133 435 Pfam Protein kinase domain 95 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian9g01133 435 FunFam Probable serine/threonine-protein kinase PBL8 178 394 - -
Vian9g01133 435 FunFam Serine/threonine-protein kinase BIK1 59 177 - -
Vian9g01133 435 ProSitePatterns Protein kinases ATP-binding region signature. 98 131 IPR017441 GO:0005524
Vian9g01133 435 CDD STKc_IRAK 98 377 - -
Vian9g01133 435 Gene3D Phosphorylase Kinase; domain 1 67 177 - -
Vian9g01133 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672|GO:0006468
Vian9g01133 435 MobiDBLite consensus disorder prediction 380 435 - -
Vian9g01133 435 MobiDBLite consensus disorder prediction 380 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01133 Vian-Chr9 23682788 23685456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01133 53 374 Glycoside Hydrolase AT3G07070 45.646 6.08e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian9g01133 Pkinase 4.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01133 - - gmx:100818744 730.324