Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01130 ATGAAGGAAAGGCAACGTTGGAAGGCCGAAGAGGATGCGTTGTTATGTGCTTATGTGAGAGAGTATGGTCCTAGGGAATGGAATCTTGTGTCTCATCGCATGAACACATCTCTCAACAGGGATGCAAAGTCATGCTTGGAAAGGTGGAAGAACTACCTCGAGCCTGGCATCAAAAAGGGGTCTCTAACCGAGGAAGAGCAGCGCCTTGTAATCCGGCTTCAAGCGAAACACGGCAACAAATGGAAGAAAATTGCTGCAGAAGTTCCTGGTAGAACTGCCAAGAGGTTAGGGAAGTGGTGGGAAGTGTTCAAAGAGAAGCAACAGAGGGAGAAACAAGAGATTAACCAAGCAATTGGCCCAGTTGACAATACCAAATATGATCATATTCTTGAGACTTTTGCTGAGAAGCTAGTGAAAGAACACCCTTCACAATCATCATACCTTATGGCTGCTTCTACTGGACCCTTTATCCACACTGATGCACCTGCAACTGCTTCTGCATCTGCATCTGCATCTGCATCAGCAGCAGCATTCCTTCCTCTTTGGCTTTCAAATTCTAGCACCACCAATCCCTCACCAGCAATTAGGCCACCTTCCCCTTCTGTTACCCTTAGTCTCTCCCCCTCAATAGCACCTCCTCCCCCTTGGTTGAATGTAACAACACCTCATGGTGATAACATAGTAGTGTTAGAGTTAATAGAGTGCTGTAAGGAGTTGGAAGAAGGACATCATGCTATGGTGGCGCATAGGAAGGAGGCGGCGTGGCTGTTGAGAAGGGTGAAGCAGCAGTTGGAGGCAGAGAAGGCAGGCAGAAGGAGGGAAAAGATGGAGGAAATTGAAGCAAAGATTAAGGCTCTAGGGGAAGAACAGAATGCTGCTTTGGACAGGATTGAAACAGAATATAAAGAACAGATAGCAGGATTGAGGAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGTTGAGGAATGGAATGCAAAGCACATGAGGGTAGTGAAGTGTATGGAACGACAAGTAGGAGGCAGAATACCCCGAATTGATGAGCCTAATGGAAGATAA 1056 0.4669 MKERQRWKAEEDALLCAYVREYGPREWNLVSHRMNTSLNRDAKSCLERWKNYLEPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEINQAIGPVDNTKYDHILETFAEKLVKEHPSQSSYLMAASTGPFIHTDAPATASASASASASAAAFLPLWLSNSSTTNPSPAIRPPSPSVTLSLSPSIAPPPPWLNVTTPHGDNIVVLELIECCKELEEGHHAMVAHRKEAAWLLRRVKQQLEAEKAGRRREKMEEIEAKIKALGEEQNAALDRIETEYKEQIAGLRRDAESKEQKLVEEWNAKHMRVVKCMERQVGGRIPRIDEPNGR 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01130 351 Coils Coil 298 318 - -
Vian9g01130 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Vian9g01130 351 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Vian9g01130 351 Coils Coil 269 296 - -
Vian9g01130 351 CDD SANT 6 53 IPR001005 -
Vian9g01130 351 Gene3D - 62 124 - -
Vian9g01130 351 SMART sant 3 55 IPR001005 -
Vian9g01130 351 SMART sant 58 106 IPR001005 -
Vian9g01130 351 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Vian9g01130 351 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Vian9g01130 351 Pfam Myb-like DNA-binding domain 7 68 - -
Vian9g01130 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Vian9g01130 351 FunFam MYB-related transcription factor 4 58 - -
Vian9g01130 351 CDD SANT 63 104 IPR001005 -
Vian9g01130 351 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 340 - -
Vian9g01130 351 Gene3D - 4 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01130 Vian-Chr9 23619680 23620735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01130 1 344 MYB Transcription Factor Family AT2G37630 57.143 7.86e-137 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian9g01130 Myb_DNA-bind_6 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01130 K09422 - zju:107430642 445.277