Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01106 ATGTCTCTCTCAGGTAGCGATGATGAGATGGAAATGGATTTTCTTCGTGATCGGTACCAGGAAATGGACGGCGGAAACTTTGAAGTGTTTCTGAGTTTCAGAGGGGAAGATACGCGTGCTTCTTTCACTTCGCATCTCTACACGGCTCTTCAGAATGCAGGAATCTTTGTTTTCAAGGATGACGAGTCACTTTCACGGGGAAAGCAAATTTCACCCTCTTTGAGGCTAGCCATCGAAGAGTCTCGAATTTCTATTGTTGTTTTCTCAAAAAATTATGCAGAGTCGATTTGGTGTATGAAAGAGTTGGAGAAAATAATGGAGTGTCACAGAACCATAGGGAATGTGGTAATACCAGTGTTTTACGACGTTGACCCCTCTGAAGTACGTCATCAAAGAGGCGACTTTGGGAAAGCATTTCGACGTCTTTTGAGCAAGTTTTCGATAGAGAAAGAGGTAAAGGTCCTGGATTGGAAACAGCTTTGGTGGAAGACTCTTCGTGAGATTTGTGACATCTCAGCTCTTCAAATCATATTTTCCAGTTGGACTGAAAGGAGAGACAAACTCGACAACCGATGGAAAAAGACACTTCTTGTTCAGATCTCAAAGATTTTAGACTTAAATCCAAGGTGGAAAATGAAGATTGCTGATAGTATAGAGTCCATCGTGAGCCAGTCGACGAGGGGACTTCTTGAAGGAGATGAAATCCCATTTAGAAAAGAGAAGGTTGATGATGTGAAGGACTTCCTCGTGAAGCAATGGACGGAGGTATTTTTTGAGCCTGTTAGCATCTCAGAGGTTGCATTACTAGATCCATGTGGAGAAACGAAGATTGCTAATGCCATAAAATTAAACTTGGAGCATTGTAGGGAGGCACTTTTTGAGGCTGCTGGCATCTCAAGGAACTTAGTCTTGAATTTCTGCGAAGAAACGGAGATTACTAATGCGATAGAACTCCACATGAAACATTGGATGGACGCATTTTCTAAGGATGATGGTACCGTCTTACATTCCGGTTATCCCTGTGTACATATTCAGGGTCTAGGTAACAGTATAACATTTATGGAATCCGATTTCCAAAGTAGATTGGAGACGGTTTATTCTGAGATAAGTTCGCTCAAGCTTCATTGGCGGGAGAAAGTTCTTAAGGCTTATGGTAACGAACTATATTCCAGGAGAAAAAGTGACATAGAACGCCACTTGGAGCGTTGCGCTAGTGCACTTACTAAGGCTGCTCGCATCTCAACAGGTTTTCAATCAAGTCTTCGAAAGCTGAAGGCTTACAATCGGATAGAGAGCCTTGTAGAATATTGGAGGGGCGCACTCTGTGAGACTGCTGAAATTTCGAGGTTGGTAGTTCAGTACTACAGAGGACTAACGGATAATGAGATCAACTATATGGAGAAGAATGCTAGGGACGCACTTCGTGAGGCTGCTGGCATCTCCGGGCTTGTAATCCTCAATTCTAGGAATGAAAGTGAGGCTGTGAAAAATATTGTTAAAAATGTTACAAGTTTGTTGAACAAGACAGAGTTGTTTGTTGCCAAGAATCCTGTCGGAGTAGAATCTCGAGTGCAGGAAATGGTTCAATTGCTAGAACAAAAACAATCAAACGATGTTCTACTACTTGGGATATGGGGGATGGGAGGCATTGGAAAAACAACTATTGCAAAAGCAATTTACAATAAGATTGGCCGCAATTTTGAGGAAAGGAGTTTCCTTGCAGATATTAGGGAGGCTTGGGGGCAAGAAGCTGGCCACGTTTGTTTACAACAACAACTTCTATATGATATCCATAAAGAAAACAATACAAAGATACATAACAGTGAATCAGGAAAAGTTATACTAAGAGAAAGACTTCGCCATAAAAGGATACTTCTTATACTTGATGATGTAAATAAATTACAGCAATTAAATGCTTTGTGTGGAAGTCGTGAATGGTTTGGTTCAGGGAGTAGAATAATCATCACAACCAGAGACATACATTTACTTAGAGGGAAAAGAGTTGATCAAGTTTTCGCAATGACAGAAATGAATGTAGATGAATCCATTGAGCTGTTTAGTTGGCATGCATTCAAACAAGCAAGTCCCGAAGAAGATTTTATTGAACTTTCAAGAAACGTAGTTGCTTATGCTGGGGGCTTGCCACTTGCTCTTGAAGTCCTTGGGTCTTATTTGTTTGATATGGAGGTAACAGAATGGAAGAGTGTATTGGAAAAACTTAGGAAAATTCCTAATGATGAAGTACAGGAGAAGTTAAAAATAAGCTATGATGGTTTAAGTGATGATACTGAGAAAGGAATATTCCTTGACATAGCATGTTTCTTTATAGGAAAGGATCGAAATGATGTTATACATATATTGAATGGTTGTGGACTTTTCGCAGAAAATGGAATACGTGTCTTGGTAGAGCGAAGTCTTGTAACTGTGGATGATAAGAACCAACTTGGAATGCATGATTTGCTACGGGACATGGGAAGGGAAATTATTCGTTCAAAATCACCAATGGAGCTTGAGGAGCGTAGCAGGTTATGGTTTCATGAGGATGTGCTTGATGTGTTATCAAAAGAAACTGGAACAAAATTTATTGAGGGATTGACTTTGAAGTTACCTAGAACTAATACAAAATCTCTGTGCACTAAAGCATTTATGAACATGAAGAAACTCAGGTTGCTGCAACTTTCTGGTGTAGAACTTGTTGGAGATTTTGAATATCTTTCCAAAGACCTGAGATGGCTTTGTTGGCATGGATTTCCTTTTGCCTTCATACCAACAAGCTTTTATCAAGGTAGTCTAGTTTCTATTGAGTTAGAAAATAGTAAGATTACCATGGTGTGGAAAGCGACTCAGCTGATGGAGAAGTTGAAAATTCTTAATCTTAGCCATTCTCATTATTTAACAAAGACACCAGACTTTTTGAATTTGCCCAATCTTGAAAAGCTTATACTCATGGATTGTCCAAGGCTGTCTGAAATTTCATATACCATTGGTCATCTCACCAAAGTTCTACTAATAAACTTTCAAGATTGTATTAGCCTTCGTAACCTTCCAAGAAGTATCTATAAGTTGAAATCTCTTAAAACACTCATTCTTTCGGGTTGTCTAAAGATTGATAAGTTGGAAGAGGACATAGAACAGATGGAGTCTTTGACAACCCTTGTTGCTGACAAGACTGCTATAAGAAGGGTGCCCTTTTCAATAGTCAGATCTAAAAGTATTGGATATATTTCATTATGTGGTTATGAAGGATTTTCCCGCGATGTGTTTCCCTCTATCATTTGGTCTTGGATGTCACCAGTAAATAGTCTGTCTTCTCGTGTTCAAACATTGGTGGACATGTCTTCTCTTGTTTCTTTAGATGTACAAAATAGCAGTTCCAATCAGCTATCATATATATCTGAGGAACTTCCAAAGCTTCAAAGTCTTTGGATAGAGTGTGGTTCTGATCTTCAACTTTCTCGAGATACAACGAGTATTTTGGATGCTTTAAATGCGACAAATTCTGAAGAATCGGAGTCATATGGAACAACATCACAAATGCAGAATGTATTTACGTTAATTGAATGCAATTCAAGATCTAAATTGTTTGAGAAGACACTTTTAATTCAGATGGGAAGGAGTTGGGAAATCACACATATTCTGAAACAGAGAATTTTACAGAATGTAACTACGAGTGATGGCGGTGATTTGCTACCTGGCGATTGTTATCCAGATTGGTTAACCTTCAGCAGCGAAGGTTCTTCTGTGACTTTTGAAATTCCTGAAGTGAATGGGCGTAGCTTGAAGACAATGATGTGCCATATCCATTATTCTTCCTCAGACAGTATAACATCAGACGGCCTGAAAAATTTGTTGGTGATAAATCACACAAAGAGCACCATTCAGCTTTATAAGAGAAATGCATTAGCGTCGTTTGATGATGAGGAGTGGCAGAGGGTACTATCAAACATTGATCCTGGAAACAAGGTGCAAATTGTTGTTGTTTTCTGGAACAGAATAACTGTTAACAAGACGTCAATTTATCTTATATATGAGGCAATTGTTGATGAAAAAGTAGAGCACTATCATGCATCAAATATGAATGTTCCTAGGTCGATCTCTCCCGGAGTGGAATCCATGGAGGACTTGAGGGGTGCTTCCGTTAAAAGCTTAACTAAACGCTTATTCAACAAATTCTTATCATGTAAATACTTTTGTAAAGGGAAAGTTGAAAAGAAGAAAAATTAA 4224 0.3897 MSLSGSDDEMEMDFLRDRYQEMDGGNFEVFLSFRGEDTRASFTSHLYTALQNAGIFVFKDDESLSRGKQISPSLRLAIEESRISIVVFSKNYAESIWCMKELEKIMECHRTIGNVVIPVFYDVDPSEVRHQRGDFGKAFRRLLSKFSIEKEVKVLDWKQLWWKTLREICDISALQIIFSSWTERRDKLDNRWKKTLLVQISKILDLNPRWKMKIADSIESIVSQSTRGLLEGDEIPFRKEKVDDVKDFLVKQWTEVFFEPVSISEVALLDPCGETKIANAIKLNLEHCREALFEAAGISRNLVLNFCEETEITNAIELHMKHWMDAFSKDDGTVLHSGYPCVHIQGLGNSITFMESDFQSRLETVYSEISSLKLHWREKVLKAYGNELYSRRKSDIERHLERCASALTKAARISTGFQSSLRKLKAYNRIESLVEYWRGALCETAEISRLVVQYYRGLTDNEINYMEKNARDALREAAGISGLVILNSRNESEAVKNIVKNVTSLLNKTELFVAKNPVGVESRVQEMVQLLEQKQSNDVLLLGIWGMGGIGKTTIAKAIYNKIGRNFEERSFLADIREAWGQEAGHVCLQQQLLYDIHKENNTKIHNSESGKVILRERLRHKRILLILDDVNKLQQLNALCGSREWFGSGSRIIITTRDIHLLRGKRVDQVFAMTEMNVDESIELFSWHAFKQASPEEDFIELSRNVVAYAGGLPLALEVLGSYLFDMEVTEWKSVLEKLRKIPNDEVQEKLKISYDGLSDDTEKGIFLDIACFFIGKDRNDVIHILNGCGLFAENGIRVLVERSLVTVDDKNQLGMHDLLRDMGREIIRSKSPMELEERSRLWFHEDVLDVLSKETGTKFIEGLTLKLPRTNTKSLCTKAFMNMKKLRLLQLSGVELVGDFEYLSKDLRWLCWHGFPFAFIPTSFYQGSLVSIELENSKITMVWKATQLMEKLKILNLSHSHYLTKTPDFLNLPNLEKLILMDCPRLSEISYTIGHLTKVLLINFQDCISLRNLPRSIYKLKSLKTLILSGCLKIDKLEEDIEQMESLTTLVADKTAIRRVPFSIVRSKSIGYISLCGYEGFSRDVFPSIIWSWMSPVNSLSSRVQTLVDMSSLVSLDVQNSSSNQLSYISEELPKLQSLWIECGSDLQLSRDTTSILDALNATNSEESESYGTTSQMQNVFTLIECNSRSKLFEKTLLIQMGRSWEITHILKQRILQNVTTSDGGDLLPGDCYPDWLTFSSEGSSVTFEIPEVNGRSLKTMMCHIHYSSSDSITSDGLKNLLVINHTKSTIQLYKRNALASFDDEEWQRVLSNIDPGNKVQIVVVFWNRITVNKTSIYLIYEAIVDEKVEHYHASNMNVPRSISPGVESMEDLRGASVKSLTKRLFNKFLSCKYFCKGKVEKKKN 1407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01106 1407 ProSiteProfiles TIR domain profile. 25 169 IPR000157 GO:0007165
Vian9g01106 1407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 771 IPR027417 -
Vian9g01106 1407 SUPERFAMILY L domain-like 865 1146 - -
Vian9g01106 1407 SMART till_3 26 171 IPR000157 GO:0007165
Vian9g01106 1407 Gene3D - 456 512 IPR035897 -
Vian9g01106 1407 Gene3D - 677 760 IPR042197 -
Vian9g01106 1407 Pfam NB-ARC domain 521 748 IPR002182 GO:0043531
Vian9g01106 1407 SUPERFAMILY "Winged helix" DNA-binding domain 746 853 IPR036390 -
Vian9g01106 1407 SMART AAA_5 538 678 IPR003593 GO:0016887
Vian9g01106 1407 Gene3D Ribonuclease Inhibitor 861 1010 IPR032675 -
Vian9g01106 1407 PRINTS Disease resistance protein signature 711 725 - -
Vian9g01106 1407 PRINTS Disease resistance protein signature 618 632 - -
Vian9g01106 1407 PRINTS Disease resistance protein signature 541 556 - -
Vian9g01106 1407 PRINTS Disease resistance protein signature 1020 1036 - -
Vian9g01106 1407 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 431 1160 IPR044974 GO:0006952
Vian9g01106 1407 Gene3D Ribonuclease Inhibitor 1011 1163 IPR032675 -
Vian9g01106 1407 FunFam Disease resistance protein (TIR-NBS-LRR class) 25 194 - -
Vian9g01106 1407 Gene3D - 25 230 IPR035897 -
Vian9g01106 1407 Gene3D - 513 670 IPR027417 -
Vian9g01106 1407 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 169 IPR035897 -
Vian9g01106 1407 Pfam TIR domain 27 161 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01106 Vian-Chr9 22971841 22991734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01106 742 833 WRKY Transcription Factor Family AT5G45050 34.409 3.60e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01106 - - var:108322530 2414.8