Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01083 ATGCAAGTGTTTTACTACTTTATAAAGTCAGAGAATGACCCTGCAAAAGATCCTCTTATGCTTTGGCTAACTGGAGGTCCTGGTTGCTCTTCGTTTTCTGGTCTTGCTTTTCAAATAGGTCCGTTGGCATTCAAGACAGATAAGTACGATGGGAACGTGCCAAATTTGGTCTTGAGGCCACAGTCCTGGACGAAGGTGTGTAGCATTATTTTTGTAGATTTGCCTTTAGGAACTGGCTTCTCGTATGCAAAAAATCTCACTGCTAATAGAAGTGACTGGAAGTTAGTTCATCATACTCATCAATTTCTTAGGAAGTGGCTGATTGATCACCCCGAATTTCTTTCAAATGACTTTTACATGGGAGCTGATTCATATTCTGGCATACCTGGCCCTGCCATTGTTCAAGAAATTTCAAAGGGAAATGAAATTGGTCTTCAACCACCTATAAATCTCCAGGGATATCTGTTAGGGAACCCAATAACAACAGGAAAAGAAAAAAATGACCAAATCCCATTTGCTCATGGAATGGGACTTATTTCTGATGAACTCTATGAGTCACTGAAGAGAAATTGTAAAGGAGAATACATATATGTAGATTTTAGAAATGAATTGTGTTTAAGAGATCTCAACTACTATGATGAGTGCCTTTCAGGAATCAATACATTCAACATTTTGGATCGCTATTGCAAAGCTGATTCTACTAAGAAACATGAAGGTCCATGGATTAGATCTCTGACTCAAAAGTTTGAGTCCTCTCTTAATTCTGGTCTCACAGAGTTAGACACAAGATGCCAAATATATGGTTTTTTCCTTGCCACTCAATGGGCCAATGATGAGAGTGTTCGCAAATCGCTGCACATTCGAGAGGGAACAAAGGGTAAATGGGAACGTTGTTGGACTAGTGATTTTGAGCATGAGATCTCTAGTAGCTTCGCCTTTCATGTAAATCTCAGTGCGAAAGGATATCGTTCTTTAATATATAGTGGGGATCATGATGCAGTTGTTCCTTTCATGTCGACTCAAGCATGGATCAGAGCTCTGAACTACTCCATTGTAGAAGATTGGAGGCCATGGCTTCTAGAAAACCAAGTTGCAGGATACACAAGAAGATACTCTAATCAAATGACATTTGCAACTGTGAAGGGTTCAGGACACACAGCTCCTGAGTACAAGCCCGATGAAGGTTACGCCATGTTCAGCAGGTGGATAGCTAGTAAGCCTTTGTAA 1227 0.4026 MQVFYYFIKSENDPAKDPLMLWLTGGPGCSSFSGLAFQIGPLAFKTDKYDGNVPNLVLRPQSWTKVCSIIFVDLPLGTGFSYAKNLTANRSDWKLVHHTHQFLRKWLIDHPEFLSNDFYMGADSYSGIPGPAIVQEISKGNEIGLQPPINLQGYLLGNPITTGKEKNDQIPFAHGMGLISDELYESLKRNCKGEYIYVDFRNELCLRDLNYYDECLSGINTFNILDRYCKADSTKKHEGPWIRSLTQKFESSLNSGLTELDTRCQIYGFFLATQWANDESVRKSLHIREGTKGKWERCWTSDFEHEISSSFAFHVNLSAKGYRSLIYSGDHDAVVPFMSTQAWIRALNYSIVEDWRPWLLENQVAGYTRRYSNQMTFATVKGSGHTAPEYKPDEGYAMFSRWIASKPL 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01083 408 Pfam Serine carboxypeptidase 2 404 IPR001563 GO:0004185|GO:0006508
Vian9g01083 408 PRINTS Carboxypeptidase C serine protease (S10) family signature 106 131 IPR001563 GO:0004185|GO:0006508
Vian9g01083 408 PRINTS Carboxypeptidase C serine protease (S10) family signature 72 82 IPR001563 GO:0004185|GO:0006508
Vian9g01083 408 PRINTS Carboxypeptidase C serine protease (S10) family signature 59 71 IPR001563 GO:0004185|GO:0006508
Vian9g01083 408 PRINTS Carboxypeptidase C serine protease (S10) family signature 375 388 IPR001563 GO:0004185|GO:0006508
Vian9g01083 408 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 2 392 IPR001563 GO:0004185|GO:0006508
Vian9g01083 408 Gene3D alpha/beta hydrolase 1 407 IPR029058 -
Vian9g01083 408 FunFam Serine carboxypeptidase-like 11 1 408 - -
Vian9g01083 408 FunFam Carboxypeptidase 311 405 - -
Vian9g01083 408 SUPERFAMILY alpha/beta-Hydrolases 2 407 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01083 Vian-Chr9 22337162 22341523 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian9g01083 271 408 Calmodulin-binding Proteins AT2G22960 58.993 4.31e-56 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01083 K16296 - gmx:100780069 743.806